Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021154
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   1.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.5  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   7.5  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    21   7.5  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   7.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.9  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 358 SVHNWHHFSHVIRDETVEQMLIA 290
           SVH+ HH   V RD   E +L+A
Sbjct: 21  SVHHCHHNGVVHRDLKPENLLLA 43


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 202 KRSRLNYASSRSTDTKIH*QVHLSYG 279
           K SR+      STD   H QV+ S+G
Sbjct: 673 KDSRIKTTEKLSTDPNTHFQVNQSHG 698


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 563 PTGMPIPHAPKSPRPRIRFR 504
           P G+P  H   +P+  +RF+
Sbjct: 273 PPGVPGDHGDHAPKQTVRFK 292


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -1

Query: 119 PGCLRWSRPERPLV 78
           P   +W  P RP+V
Sbjct: 837 PNLTKWGNPNRPIV 850


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 228 LSIDRYENPLTSTSILWGSW 287
           LS+D Y+N L     L G W
Sbjct: 159 LSMDGYQNILDKKDELLGEW 178


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 228 LSIDRYENPLTSTSILWGSW 287
           LS+D Y+N L     L G W
Sbjct: 159 LSMDGYQNILDKKDELLGEW 178


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 228 LSIDRYENPLTSTSILWGSW 287
           LS+D Y+N L     L G W
Sbjct: 159 LSMDGYQNILDKKDELLGEW 178


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 434 DKGHVYDVLKNW 469
           D+   YDVL++W
Sbjct: 260 DQSETYDVLRSW 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,795
Number of Sequences: 438
Number of extensions: 4684
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)