Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021152X
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    29   0.44 
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    26   3.1  
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    26   4.1  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   4.1  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    26   4.1  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   7.2  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   7.2  
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|...    25   9.5  

>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 15/66 (22%), Positives = 33/66 (50%)
 Frame = +1

Query: 256 LQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARNTVR* 435
           +  L +R+    ++++Q+ +E S  R E +TT E +    +     YE+ + +    +  
Sbjct: 180 VDELRERITLKEERIQQMRNEASQRRFEFKTTIECLEESSNRAIETYENRIAELEAQLEM 239

Query: 436 YISRES 453
           Y+S +S
Sbjct: 240 YMSGKS 245


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 387 FNVGNLAGDHLLCGLYFTT*SRILTLQLAYFIDIGSQPVV 268
           F  G+LAG    C ++FT    ++ ++LAY  + G  P +
Sbjct: 120 FLSGSLAGT---CSVFFTYPLELIRVRLAYITNTGKNPTL 156


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -3

Query: 482 TISSNQFQV*LSLEMYHLTVFLASWSSCSYIPLMLETSRVTTSC 351
           T+SSNQ+Q+ L++  Y  T + +   SCS +  +   + +T  C
Sbjct: 2   TLSSNQYQLPLNVRPY-TTTWCSQSPSCSNLLAIGHDTGITIYC 44


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = -2

Query: 144 CSDDTTLAFDEDV----TVFLVFVYLVGYI 67
           C+D  +L   E +    T++L  VY++GYI
Sbjct: 319 CTDSVSLLITEPIVVCFTLYLTVVYIIGYI 348


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 329 YVVKYKPHRRWSPARFPTLKECTSMNSKMPGILLDDTSREKAKLEIDL 472
           YV   K  +  +  RFP   +C++M+    G +L      +AKLE  L
Sbjct: 319 YVAFNKAAKEDAELRFPFNVKCSTMHGLAYGAILAQADLPQAKLERQL 366


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 277  LAAYIDKV-RQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDA 417
            ++A +D V R +ESE+     ++       TRE+S I  + EH+L+ A
Sbjct: 1445 ISASLDDVERSIESEDFQSVGDVNVKVNRNTREISFIYNVDEHKLEMA 1492


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 222 GLSGLLGRPAELEGRLPTGVLDCSGLCSD 136
           G+   + R  +L   LPTG ++CSG   D
Sbjct: 715 GIRDRMYRSGDLGRYLPTGNVECSGRADD 743


>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
           Pef1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 288

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 85  ILSGIHFCHNNKL*H 41
           +L GI FCH N++ H
Sbjct: 110 LLKGISFCHENRVLH 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,753
Number of Sequences: 5004
Number of extensions: 38809
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)