Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021152X
(538 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35062| Best HMM Match : IATP (HMM E-Value=1.7) 70 1e-12
SB_42612| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_35649| Best HMM Match : M (HMM E-Value=6e-09) 34 0.064
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 32 0.34
SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29) 31 0.45
SB_30512| Best HMM Match : GLTT (HMM E-Value=0.00058) 31 0.60
SB_5816| Best HMM Match : RVT_1 (HMM E-Value=3e-16) 31 0.79
SB_27088| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_16649| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_52092| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_33073| Best HMM Match : Protamine_P1 (HMM E-Value=1.5) 28 4.2
SB_10610| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_269| Best HMM Match : ubiquitin (HMM E-Value=1.2e-09) 28 4.2
SB_40853| Best HMM Match : BTB (HMM E-Value=1.4e-17) 28 5.6
SB_18982| Best HMM Match : M (HMM E-Value=1.1e-06) 28 5.6
SB_48940| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09) 28 5.6
SB_21939| Best HMM Match : F-box (HMM E-Value=0.001) 27 7.3
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_27760| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_17486| Best HMM Match : CheR (HMM E-Value=3.2) 27 9.7
SB_4770| Best HMM Match : Exo_endo_phos (HMM E-Value=0.031) 27 9.7
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_35062| Best HMM Match : IATP (HMM E-Value=1.7)
Length = 223
Score = 69.7 bits (163), Expect = 1e-12
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = +1
Query: 256 LQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDAR 420
LQ+LNDRLA YID+V+ LE ENS LR E+ +++ V REV ++K +YE EL DAR
Sbjct: 139 LQHLNDRLATYIDRVKNLEQENSKLRSEVTVSRKTVEREVDSMKSLYETELADAR 193
>SB_42612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Frame = +1
Query: 256 LQNLNDRLAAYIDKVRQLESENSGLRREIQ--TTQEVVTREVSNIKGMYEHELQDARN 423
LQ+LNDR A YI +VRQ+ E++G I T +++ E+ +K MYE +L++ R+
Sbjct: 18 LQSLNDRFANYISRVRQMR-EHNGRNETINFINTTKILEEEILALKAMYERQLEELRS 74
>SB_35649| Best HMM Match : M (HMM E-Value=6e-09)
Length = 1279
Score = 34.3 bits (75), Expect = 0.064
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = +1
Query: 259 QNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARNTVR 432
+NL L A + +L S+ L ++++ ++E+S++K +E ELQ+ R T+R
Sbjct: 716 RNLGSELKALKKENEELVSQVESLNQKVEQVVCDNSKELSDLKEKFERELQEKRTTIR 773
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 31.9 bits (69), Expect = 0.34
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +1
Query: 241 ARER*LQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDAR 420
A ER L D + D+ LE +N GL RE++T + V+ ++N + EL R
Sbjct: 432 ALERDLSTRTDMVRKLRDEKSALEKKNEGLIRELETNKRFVSTALNN--STDDEELSSVR 489
Query: 421 NTV 429
+ V
Sbjct: 490 DQV 492
>SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29)
Length = 690
Score = 31.5 bits (68), Expect = 0.45
Identities = 16/65 (24%), Positives = 35/65 (53%)
Frame = +1
Query: 226 QAKPFARER*LQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHE 405
QAK + + L+N +++ +K++ LE +NS + E + + E+ +K +E E
Sbjct: 441 QAKYTSMLKDLKNERNKIIELEEKLKALEEQNSQRQEEYDSNKSTHENELLVLKAKHEEE 500
Query: 406 LQDAR 420
L++ +
Sbjct: 501 LKETK 505
>SB_30512| Best HMM Match : GLTT (HMM E-Value=0.00058)
Length = 1083
Score = 31.1 bits (67), Expect = 0.60
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 292 DKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARNTVR 432
+K + LE EN+ LR+ + TQE V + N + E E Q ++
Sbjct: 284 EKYKLLEKENADLRQSVSETQE-VANSLQNRNSLLEREKQSLEENIQ 329
>SB_5816| Best HMM Match : RVT_1 (HMM E-Value=3e-16)
Length = 904
Score = 30.7 bits (66), Expect = 0.79
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -2
Query: 159 DCSGLCSDDTTLAFDEDVTVFL-VFVYLVGYIFVTITNFDTQ*CIF 25
D +GL SD+ + DED++ L VF L G + + I + DT C F
Sbjct: 25 DKTGLSSDELRVLDDEDLSALLTVFKALYGDVDLRILDLDTTVCRF 70
>SB_27088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 362 SPARFPTLKECTS--MNSKMPGILLDDTSREKAKLEIDLKRLYEENDDL 502
+PA + TS +N+K L++D+ +E L+ DLK L EN DL
Sbjct: 84 NPALYQNFIITTSEYVNTKKKLFLINDSKKEVDDLKDDLKDLQAENKDL 132
>SB_16649| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 483
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 289 IDKVRQLESENSGLRREIQTTQEV 360
+DK+R LE EN+ LR+E+ +++
Sbjct: 171 VDKIRHLEKENTRLRQEVDNLRKM 194
>SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 81 LVGYIFVTITNFDTQ*CIFHTKGE 10
L+GY+F+ ++N + C H KGE
Sbjct: 567 LIGYVFMMLSNTNIHQCFQHCKGE 590
>SB_52092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 262 NLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHE 405
+L +LAA + L E + LR+E+ TT++ + +N K + EH+
Sbjct: 167 SLQQQLAAKESNISLLTRELASLRKELHTTRQFINS--TNSKTLEEHQ 212
>SB_33073| Best HMM Match : Protamine_P1 (HMM E-Value=1.5)
Length = 537
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 257 YKISTTGWLPISIKYASWRVRIRDYVVKYKPHR-RWSPARFPTLKECTSMNSK 412
Y+ + PI+++Y VR R V+Y+P R+ P L E T+ SK
Sbjct: 483 YRPIAVRYRPIAVRYRPIAVRYRPIAVRYRPIAVRYRPIAENGLVERTTRQSK 535
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 257 YKISTTGWLPISIKYASWRVRIRDYVVKYKP 349
Y+ S + PI+++Y VR R V+Y+P
Sbjct: 462 YRPSAVRYRPIAVRYRPIAVRYRPIAVRYRP 492
>SB_10610| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 594
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 275 GWLPISIKYASWRVRIRDYVVKYKPHRRWSPARFPTLKECT 397
GW+ ++ RVR+ D +V+ PH A PT+ + T
Sbjct: 463 GWITNAVYTGISRVRLADQIVRVIPHDDTPGALVPTVLQAT 503
>SB_269| Best HMM Match : ubiquitin (HMM E-Value=1.2e-09)
Length = 414
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 449 SLEMYHLTVFLASWSSCSYIPLMLETSRVTTSCVVCISRRN 327
S M+HL+ +SW S+ + ++T R TS + RN
Sbjct: 32 STTMFHLSANASSWEKRSFKRIKMQTVRELTSLIFAPRARN 72
>SB_40853| Best HMM Match : BTB (HMM E-Value=1.4e-17)
Length = 259
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 295 KVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHE 405
KV LE + + +R+EI+ T E RE+S + +H+
Sbjct: 175 KVATLEQKPNSIRKEIKETCEWAIREISRVVFHKKHQ 211
>SB_18982| Best HMM Match : M (HMM E-Value=1.1e-06)
Length = 825
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 196 RSSKQST*SYQAKPFARER*LQNLNDRLAAYIDKVRQLESENSGLRREIQ 345
RS++Q + K + +R +++ND LA D R + EN L+REI+
Sbjct: 566 RSNRQKE---RKKEWLAKRRAKSMNDGLAMDQDSDRTIMDENDSLKREIK 612
>SB_48940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 298
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +1
Query: 286 YIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARNTV 429
Y+ + + + + L REI+ VV++E+ + K E+QD+ +V
Sbjct: 83 YVALLEEWKKADVNLLREIRDVGNVVSKEIKDSKKSISKEIQDSVKSV 130
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 196 RSSKQST*SYQAKPFARER*LQNLNDRLAAYIDKVRQLESENSGLRREIQ 345
RS++Q + K + +R +++ND LA D R + EN L+REI+
Sbjct: 544 RSNRQKE---RKKEWLAKRRAKSMNDGLAMDQDSDRTIMDENDSLKREIK 590
>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
Length = 1998
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 407 SKMPGILLDDTSREKAKLEIDLKRLYEENDDLK 505
SK+ + + +REK LE +++ L EEN++LK
Sbjct: 1794 SKLEEEMNNRLAREKKPLEEEVRELQEENEELK 1826
>SB_21939| Best HMM Match : F-box (HMM E-Value=0.001)
Length = 909
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 171 TGVLDCSGLCSDDTTLAFDEDVTVF 97
TG + +G+C DD++ DED +F
Sbjct: 830 TGSIHVTGVCQDDSSSTSDEDSNMF 854
>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3511
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/63 (23%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +1
Query: 223 YQAK-PFARER*LQNLNDRLAAYIDKVRQLESENSGLRR--EIQTTQEVVTREVSNIKGM 393
+Q+K PF+ ++ +++ Y ++V L+S+ + LRR I ++ +++++ N++
Sbjct: 513 FQSKGPFSSSIGVKEALEQVTQYHEQVVNLKSQETSLRRGLNIFKIEQALSKDLQNLEKD 572
Query: 394 YEH 402
EH
Sbjct: 573 LEH 575
>SB_27760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 266 STTGWLPISIKYASWRVRIRDYVVKYKPHRRWSPARFPTLKECT 397
S GW+ ++ RVR+ D +V+ PH A PT + T
Sbjct: 104 SLEGWITNAVYTGISRVRLADQIVRVIPHDDTPGALVPTGLQAT 147
>SB_17486| Best HMM Match : CheR (HMM E-Value=3.2)
Length = 1177
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 266 STTGWLPISIKYASWRVRIRDYVVKYKPHRRWSPARFPTLKECT 397
S GW+ ++ RVR+ D +V+ PH A PT + T
Sbjct: 1075 SLEGWITNAVYTGISRVRLADQIVRVIPHDDTPGALVPTGLQAT 1118
>SB_4770| Best HMM Match : Exo_endo_phos (HMM E-Value=0.031)
Length = 599
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 290 SIKYASWRVRIRDYVVKYKPHRRWSPARFPTLKECTSMNSKMPGILLDDT 439
++K +W D+V+ +PH SPA+ P K TS + +P DT
Sbjct: 164 TVKVLTWDTGTLDWVLTNRPHLLSSPAQLP--KIGTSDHYAVPSSTRRDT 211
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 380 TLKECTSMNSKMPGILLDDTSREKAKLEIDLKRLYEENDDLKKA*TRRQKTA 535
T ++C LLD + +E E +L + ++EN+ LK+ + Q T+
Sbjct: 3477 TERKCLLQEKNRTQDLLDKSEQELKAAEENLVKSFQENESLKRQMLKVQSTS 3528
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,102,052
Number of Sequences: 59808
Number of extensions: 301953
Number of successful extensions: 1174
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -