Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021152X
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   3.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   6.0  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
          protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 85 ILSGIHFCHNNKL*H 41
          IL  +H CH+N + H
Sbjct: 18 ILESVHHCHHNGVVH 32


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 10  FAFRVENTLLCVKVCYCDKNVSH 78
           F F   + L+  +VCY   +V+H
Sbjct: 150 FFFAATSLLVVAEVCYFTAHVTH 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,015
Number of Sequences: 438
Number of extensions: 2600
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)