Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021151
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom...    26   5.4  
SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi...    25   9.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   9.5  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    25   9.5  

>SPAC1296.04 |mug65||spore wall assembly protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -2

Query: 779 FAVSPYTACTETCMA*SWRQAYNYWQ-DQPGELSFS 675
           F  SP +  T TC   SW  A+  W  D  G++  S
Sbjct: 46  FVASPVSTKTATCPDPSWEWAWQRWYIDMSGDVDES 81


>SPAC1B3.02c |||transcription elongation factor, Elf1
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 75  SPQCIYVKLLTGQDIYERWIDTSD 4
           S QC+   L    D+Y  WID  D
Sbjct: 55  SHQCLITALSAPIDVYSDWIDACD 78


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
 Frame = +2

Query: 590 NTIIIPKHDHAVRAFLRPMRCDVLVFEL--TKKRAP---LVDPASSYMLVSKI 733
           NT  + ++DH + +    MRC+VLV +L  T K +P   ++   + Y++++KI
Sbjct: 805 NTCGLSQNDHVIFS----MRCEVLVHKLGRTSKPSPRQLVLTKKNLYLVITKI 853


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 769 RLIRLALRH--AWLNLGDKHITTGRINQGSSLFR 674
           + IR+ +RH  AW  LG  ++ TGR +Q    F+
Sbjct: 490 KAIRVNVRHYNAWYGLGMVYLKTGRNDQADFHFQ 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,731
Number of Sequences: 5004
Number of extensions: 55438
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)