Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021151
         (801 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)               46   4e-05
SB_17017| Best HMM Match : TIL (HMM E-Value=4.8)                       33   0.27 
SB_35070| Best HMM Match : TIL (HMM E-Value=8.6)                       33   0.27 
SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6)            29   3.3  
SB_34698| Best HMM Match : Rhomboid (HMM E-Value=5.9e-21)              29   5.8  

>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 21/27 (77%), Positives = 22/27 (81%)
 Frame = +3

Query: 678 KRELPWLILPVVICLSPRLSHACLSAS 758
           +R   WLILPVVICLS RLSHACLS S
Sbjct: 126 RRVAIWLILPVVICLSQRLSHACLSIS 152


>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 21/27 (77%), Positives = 22/27 (81%)
 Frame = +3

Query: 678 KRELPWLILPVVICLSPRLSHACLSAS 758
           +R   WLILPVVICLS RLSHACLS S
Sbjct: 102 RRVAIWLILPVVICLSQRLSHACLSIS 128


>SB_17017| Best HMM Match : TIL (HMM E-Value=4.8)
          Length = 171

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = +3

Query: 678 KRELPWLILPVVICLSPRLS 737
           +R   WLILPVVICLS RLS
Sbjct: 147 RRVAIWLILPVVICLSQRLS 166


>SB_35070| Best HMM Match : TIL (HMM E-Value=8.6)
          Length = 147

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = +3

Query: 678 KRELPWLILPVVICLSPRLS 737
           +R   WLILPVVICLS RLS
Sbjct: 123 RRVAIWLILPVVICLSQRLS 142


>SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6)
          Length = 1953

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +3

Query: 627  ERFYARCGATF*FSS*R-KRELPWLILPVVICLSPRLSHACLSASRIRR 770
            E + A+  AT  F S   K + P LIL   + L PR+S  CLS+ ++++
Sbjct: 1882 ELYLAQAAATKLFQSAADKPDNPVLILDAYVNLGPRISVECLSSRKLQQ 1930


>SB_34698| Best HMM Match : Rhomboid (HMM E-Value=5.9e-21)
          Length = 261

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 726 PRLSHACLSASRIRRYREWLNISV 797
           PRL  AC+SA+ +  Y +WL +++
Sbjct: 49  PRLRDACVSANHVWYYGDWLRLAL 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,807,859
Number of Sequences: 59808
Number of extensions: 399271
Number of successful extensions: 770
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)