Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021150X
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    28   0.30 
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    27   0.93 
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    26   1.2  
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    24   4.9  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    24   6.5  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    24   6.5  
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    23   8.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    23   8.6  

>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 28.3 bits (60), Expect = 0.30
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 315 WSDLGRVDVNDEAFSAFLCLSSVPCDISSSTPAI-VGCQNNHIHSCT 178
           W+D+  V +   A  A L + S P   +  + A+  G Q NHI+SC+
Sbjct: 212 WNDVCGVGIAPRAKVAGLRILSAPITDAVESEALNYGFQTNHIYSCS 258


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 281 RLSLLFFASHLFPVTFRAVPLPL 213
           R+S LFF  H  P  FR  P P+
Sbjct: 743 RVSSLFFQEHKLPGIFRGQPYPI 765


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 251 LFPVTFRAVPLPLWVAKIITSILALQ 174
           LF ++F  + +P W  KI+T  L +Q
Sbjct: 36  LFLLSFATITVPKWAYKIVTYSLTIQ 61


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 141 KMPSLRIDQNDLKCKNGCDYFGNP 212
           K+PSL  D  D   K+G D++ +P
Sbjct: 114 KVPSLDTDPEDAVLKDGFDWYISP 137


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 272  EKASSFTSTLPRSDQ 316
            E  SSFT++ P+SDQ
Sbjct: 1229 ENTSSFTASFPQSDQ 1243


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +3

Query: 195 DYFGNPQWQGYCSKCHREQMRGKEKQRKPHRLHRLF 302
           D+ G P +        R+    K K  +PH++H  F
Sbjct: 625 DFHGKPDYNKRSLSIERKPEAFKTKGDRPHKVHPSF 660


>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 93  YKLIETIRSYKYMITSKMPS 152
           YKL  TI S+KY   S  P+
Sbjct: 218 YKLASTIESWKYAPLSAFPN 237


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -1

Query: 312 SDLGRVDVNDEAFSAFLCLSSVPCDISSSTPAIVGCQNNHIHSCTSS 172
           + L  +  +  + +A    S++P  ++SST       N  + S TSS
Sbjct: 711 ASLSNITHSSLSLTAMSSSSAIPTSVNSSTLITASSSNTLLSSITSS 757


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,429,228
Number of Sequences: 5004
Number of extensions: 29226
Number of successful extensions: 93
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)