Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021150X
         (324 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31180| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   2e-08
SB_45840| Best HMM Match : zf-AN1 (HMM E-Value=1.2e-20)                40   4e-04
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)                38   0.002
SB_56676| Best HMM Match : Peptidase_C1 (HMM E-Value=0.0027)           28   1.5  
SB_28011| Best HMM Match : PSCyt1 (HMM E-Value=5.6)                    28   2.0  
SB_3736| Best HMM Match : THAP (HMM E-Value=0.00025)                   28   2.0  
SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.0  
SB_53869| Best HMM Match : ABC_membrane (HMM E-Value=0.34)             27   2.6  
SB_39407| Best HMM Match : TIG (HMM E-Value=0)                         27   2.6  
SB_5458| Best HMM Match : E-MAP-115 (HMM E-Value=0.3)                  27   3.5  
SB_52194| Best HMM Match : RVT_1 (HMM E-Value=0.94)                    27   4.6  
SB_6980| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.6  
SB_47544| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_31099| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_38777| Best HMM Match : Mov34 (HMM E-Value=1.6e-19)                 26   8.1  
SB_14245| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_12223| Best HMM Match : ShTK (HMM E-Value=1.8e-09)                  26   8.1  
SB_8906| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.1  

>SB_31180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 19/40 (47%), Positives = 27/40 (67%)
 Frame = +3

Query: 156 RIDQNDLKCKNGCDYFGNPQWQGYCSKCHREQMRGKEKQR 275
           R++  +L+CK GC ++GNP WQGYCS C RE    + K +
Sbjct: 14  RLNNPELRCKTGCGFYGNPAWQGYCSVCFREVYMKQHKTK 53


>SB_45840| Best HMM Match : zf-AN1 (HMM E-Value=1.2e-20)
          Length = 187

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 165 QNDLKCKNGCDYFGNPQWQGYCSKCHREQMRGKE 266
           Q    C+NGC ++GN    G CSKC ++ +R K+
Sbjct: 13  QQPTLCRNGCGFYGNSATDGMCSKCWKDVLRRKQ 46


>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
          Length = 1188

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 177  KC-KNGCDYFGNPQWQGYCSKCHREQMRGKEKQRKPHRLHRLFLDR 311
            KC + GC  +G P+  GYCSKC  + MR    +  P    + F  R
Sbjct: 1121 KCVRPGCQMYGAPETNGYCSKCLMDNMRSVYPESVPGHCTQCFEQR 1166



 Score = 32.3 bits (70), Expect = 0.093
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 177 KCKNG-CDYFGNPQWQGYCSKCHR 245
           KC+N  C +FG P   G CS C+R
Sbjct: 627 KCRNNDCTFFGLPSQDGLCSSCYR 650



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 180 CKNGCDYFGNPQWQGYCSKCHREQMR 257
           C  GC ++   +    CSKC  E +R
Sbjct: 303 CSQGCTFYATAETAFLCSKCLNEYLR 328



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 189 GCDYFGNPQWQGYCSKCH 242
           GC +FGN +    CS C+
Sbjct: 905 GCQFFGNKEMNFLCSSCY 922



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 189  GCDYFGNPQWQGYCSKC-HREQMRGKEKQ 272
            GC  FG P  +G C KC ++ Q +  +K+
Sbjct: 1043 GCLKFGTPAKKGMCEKCFNKYQQKQAQKE 1071


>SB_56676| Best HMM Match : Peptidase_C1 (HMM E-Value=0.0027)
          Length = 295

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +3

Query: 63  CYNRN*SFFAYKLIETIRSYKYMITSKMPSLRIDQNDLKCKNGCDYFGNPQWQGYCSKC 239
           CY+R        +I+T R ++Y+  +K+P+   D  D+   N      N     YC  C
Sbjct: 24  CYDRKYDKGIKPVIKTKRPHEYLNMAKLPT-SFDWRDVNGTNYASTTRNQHIPQYCGSC 81


>SB_28011| Best HMM Match : PSCyt1 (HMM E-Value=5.6)
          Length = 491

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 21/78 (26%), Positives = 38/78 (48%)
 Frame = +3

Query: 90  AYKLIETIRSYKYMITSKMPSLRIDQNDLKCKNGCDYFGNPQWQGYCSKCHREQMRGKEK 269
           A    + + S   ++T+++PS+R  +  L  K+     G+      CS C     +GK+K
Sbjct: 60  ASSFTQRLLSSNKIVTNQLPSVRQIEQFLSSKSIKYEHGHTAILAQCSFCD----KGKDK 115

Query: 270 QRKPHRLHRLFLDRTRGS 323
            +K      LF+++T GS
Sbjct: 116 TKKQEL--SLFINKTTGS 131


>SB_3736| Best HMM Match : THAP (HMM E-Value=0.00025)
          Length = 429

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 135 TSKMPSLRIDQNDLKCKNGCDYFGNPQW 218
           TS++P ++  +   KCK   DY  +P W
Sbjct: 325 TSRLPKIKSKRPKHKCKISTDYIRDPGW 352


>SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1675

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 282  EAFSAFLCLSSVPCDISSSTPAIVGCQNNHIHSCTSSH 169
            E+    LCL   PC  S+  P+I  C ++ +  C + H
Sbjct: 1561 ESSICVLCLDK-PCPPSTQVPSITECPSDSVTGCQTLH 1597


>SB_53869| Best HMM Match : ABC_membrane (HMM E-Value=0.34)
          Length = 403

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = +3

Query: 90  AYKLIETI-RSYKYMITSKMPSLR--IDQNDLKCKNGCDYFGNPQWQGYCSKCHREQMRG 260
           AY  I  I R  KY+  +   + R  ++ +DL C +  +Y      +   S+ HRE+   
Sbjct: 104 AYHSIRNIGRIRKYLDRNNSLNKRRPVEASDLPCFDNHEYDCENLTEKLDSEWHREKANA 163

Query: 261 KEKQRKPHRLHRLFL 305
               RKP     LFL
Sbjct: 164 VRNARKPSMWKALFL 178


>SB_39407| Best HMM Match : TIG (HMM E-Value=0)
          Length = 1710

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 258 LSSVPCDISSSTPAIVGCQNNHIH 187
           +   PC+++SST  ++ C   H H
Sbjct: 639 IGETPCNVTSSTSTLITCTLGHAH 662


>SB_5458| Best HMM Match : E-MAP-115 (HMM E-Value=0.3)
          Length = 274

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 183 KNGCDYFGNPQWQGYCSKCHREQMRGKEKQRKPHRLHRLFLDR 311
           K   D     QWQ    +   EQ+  +EKQR+ HR  ++  ++
Sbjct: 144 KQESDLKRREQWQKEMKQKKDEQVDEREKQREKHRQEKIMREQ 186


>SB_52194| Best HMM Match : RVT_1 (HMM E-Value=0.94)
          Length = 472

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 193 HPFLHFKSFWSIRSEGILDVIMYL*DLIVSINLYAK 86
           H  + F   WS      LDV + L D ++S +LY+K
Sbjct: 245 HRTIKFTFEWSTSQVNFLDVSLTLRDGLISTDLYSK 280


>SB_6980| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 193 HPFLHFKSFWSIRSEGILDVIMYL*DLIVSINLYAK 86
           H  + F   WS      LDV + L D ++S +LY+K
Sbjct: 189 HRTIKFMFEWSTSQVNFLDVSLTLRDGLISTDLYSK 224


>SB_47544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 585

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 193 HPFLHFKSFWSIRSEGILDVIMYL*DLIVSINLYAK 86
           H  + F   WS      LDV + L D ++S +LY+K
Sbjct: 439 HRTIKFTFEWSTSQVNFLDVSLTLRDGLISTDLYSK 474


>SB_31099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 248 FPVTFRAVPLPLWVAKIITSILALQVILV 162
           +P+     P+P + AKI  ++L ++ IL+
Sbjct: 15  YPIRKHTFPVPAFTAKIWCAVLVIECILI 43


>SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 111 IRSYKYMITSKMPSLRIDQNDLKCKNGCDYFGNPQ-WQGYCSKCHREQMRGKEKQRKPHR 287
           +  +K M+T     L     D K  +  ++FG+ + +    S+C +E M+ +EK+ K  R
Sbjct: 657 VEMHKNMVTMFKDVLEFFCMDPKKTSMEEFFGDLKTFMDQYSQCKKENMKRQEKEEKEKR 716


>SB_38777| Best HMM Match : Mov34 (HMM E-Value=1.6e-19)
          Length = 431

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 255 SSVPCDISSSTPAIVGCQNNHIHSCTSSHF 166
           S+ PCD +S TP + G +   + S   S F
Sbjct: 243 STKPCDATSGTPTVHGLRRVSVPSSLVSRF 272


>SB_14245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 230 AVPLPLWVAKIITSILALQVILVDP**RHLGCYHV 126
           A+P+P WV   +     ++   +DP  RHLGC  V
Sbjct: 204 AIPVPDWV---VNGKYWVRAEFLDPFSRHLGCIEV 235


>SB_12223| Best HMM Match : ShTK (HMM E-Value=1.8e-09)
          Length = 542

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -1

Query: 306 LGRVDVNDEAFSAFLCLSSVPCDISSSTPAIVGCQNNHIHSCTSSHFGRSVVKASWMLSC 127
           +G VD +  +F   + +  V  D+ S   A++GC +      T +  G     ASWM   
Sbjct: 434 IGCVDYDVISFQCAV-IGCVDYDVISFQCAVIGCVDYDARCATWAAEGECDSNASWMSRE 492

Query: 126 ICRT 115
            C +
Sbjct: 493 CCES 496


>SB_8906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1116

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 159 IDQNDLKCKNGCDYFGNPQWQGYCSKCHREQMRGKEKQRKPHRLHRLFL 305
           ++ +DL C +   Y      +   S+ HRE+   +   RKP     LFL
Sbjct: 8   VEASDLPCFDNHGYECENLTEKLDSEWHREKANAERNARKPSMWKALFL 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,606,281
Number of Sequences: 59808
Number of extensions: 210742
Number of successful extensions: 554
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)