Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021150X
         (324 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12040.2 68417.m01916 zinc finger (AN1-like) family protein c...    39   9e-04
At4g12040.1 68417.m01915 zinc finger (AN1-like) family protein c...    39   9e-04
At1g12440.2 68414.m01438 zinc finger (AN1-like) family protein c...    36   0.005
At1g12440.1 68414.m01437 zinc finger (AN1-like) family protein c...    36   0.005
At1g51200.1 68414.m05759 zinc finger (AN1-like) family protein c...    36   0.008
At4g22820.2 68417.m03293 zinc finger (AN1-like) family protein c...    33   0.044
At4g22820.1 68417.m03292 zinc finger (AN1-like) family protein c...    33   0.044
At2g27580.1 68415.m03342 zinc finger (AN1-like) family protein c...    33   0.058
At4g14225.1 68417.m02195 zinc finger (AN1-like) family protein c...    29   0.54 
At2g36320.1 68415.m04458 zinc finger (AN1-like) family protein c...    27   2.2  
At3g54100.1 68416.m05981 expressed protein similar to axi 1 [Nic...    27   3.8  
At2g40340.1 68415.m04974 AP2 domain-containing transcription fac...    27   3.8  
At3g62380.1 68416.m07007 hypothetical protein weak similarity to...    26   6.7  
At3g49290.1 68416.m05387 expressed protein                             26   6.7  
At1g22100.1 68414.m02763 hypothetical protein                          26   6.7  

>At4g12040.2 68417.m01916 zinc finger (AN1-like) family protein
           contains Pfam domains, PF01428: AN1-like Zinc finger and
           PF01754: A20-like zinc finger
          Length = 175

 Score = 38.7 bits (86), Expect = 9e-04
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 180 CKNGCDYFGNPQWQGYCSKCHREQMRGKEKQ 272
           C NGC +FG+P     CSKC+R  +R +E Q
Sbjct: 19  CDNGCGFFGSPSNMNLCSKCYR-SLRAEEDQ 48


>At4g12040.1 68417.m01915 zinc finger (AN1-like) family protein
           contains Pfam domains, PF01428: AN1-like Zinc finger and
           PF01754: A20-like zinc finger
          Length = 175

 Score = 38.7 bits (86), Expect = 9e-04
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 180 CKNGCDYFGNPQWQGYCSKCHREQMRGKEKQ 272
           C NGC +FG+P     CSKC+R  +R +E Q
Sbjct: 19  CDNGCGFFGSPSNMNLCSKCYR-SLRAEEDQ 48


>At1g12440.2 68414.m01438 zinc finger (AN1-like) family protein
           contains Pfam domains, PF01428: AN1-like Zinc finger and
           PF01754: A20-like zinc finger
          Length = 168

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 180 CKNGCDYFGNPQWQGYCSKCHREQMRGKEKQ 272
           C  GC +FG+P     CSKC+R+ +R  E+Q
Sbjct: 19  CVKGCGFFGSPSNMNLCSKCYRD-IRATEEQ 48


>At1g12440.1 68414.m01437 zinc finger (AN1-like) family protein
           contains Pfam domains, PF01428: AN1-like Zinc finger and
           PF01754: A20-like zinc finger
          Length = 168

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 180 CKNGCDYFGNPQWQGYCSKCHREQMRGKEKQ 272
           C  GC +FG+P     CSKC+R+ +R  E+Q
Sbjct: 19  CVKGCGFFGSPSNMNLCSKCYRD-IRATEEQ 48


>At1g51200.1 68414.m05759 zinc finger (AN1-like) family protein
           contains Pfam domains, PF01428: AN1-like Zinc finger and
           PF01754: A20-like zinc finger
          Length = 173

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 180 CKNGCDYFGNPQWQGYCSKCHREQMRGKEKQRK 278
           C N C +FG+      CSKCH++ +  +E+  K
Sbjct: 18  CTNNCGFFGSAATMNMCSKCHKDMLFQQEQGAK 50


>At4g22820.2 68417.m03293 zinc finger (AN1-like) family protein
           contains Pfam domains, PF01428: AN1-like Zinc finger and
           PF01754: A20-like zinc finger
          Length = 176

 Score = 33.1 bits (72), Expect = 0.044
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 180 CKNGCDYFGNPQWQGYCSKCHR 245
           C  GC +FG+P     CSKC+R
Sbjct: 22  CVKGCGFFGSPSNMDLCSKCYR 43


>At4g22820.1 68417.m03292 zinc finger (AN1-like) family protein
           contains Pfam domains, PF01428: AN1-like Zinc finger and
           PF01754: A20-like zinc finger
          Length = 176

 Score = 33.1 bits (72), Expect = 0.044
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 180 CKNGCDYFGNPQWQGYCSKCHR 245
           C  GC +FG+P     CSKC+R
Sbjct: 22  CVKGCGFFGSPSNMDLCSKCYR 43


>At2g27580.1 68415.m03342 zinc finger (AN1-like) family protein
           contains Pfam domains, PF01428: AN1-like Zinc finger and
           PF01754: A20-like zinc finger
          Length = 163

 Score = 32.7 bits (71), Expect = 0.058
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 180 CKNGCDYFGNPQWQGYCSKCHRE 248
           C N C +FG+   Q  CSKC R+
Sbjct: 13  CANNCGFFGSTATQNLCSKCFRD 35


>At4g14225.1 68417.m02195 zinc finger (AN1-like) family protein
           contains Pfam domains, PF01428: AN1-like Zinc finger and
           PF01754: A20-like zinc finger
          Length = 125

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 180 CKNGCDYFGNPQWQGYCSKCHREQMR 257
           C  GC +F   Q +  CSKC+ + ++
Sbjct: 8   CIRGCGFFSTSQTKNLCSKCYNDFLK 33


>At2g36320.1 68415.m04458 zinc finger (AN1-like) family protein
           contains Pfam domain, PF01428: AN1-like Zinc finger
          Length = 161

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 180 CKNGCDYFGNPQWQGYCSKCHREQMRGKEKQ 272
           C N C +FG+      CS C+ +    +++Q
Sbjct: 16  CVNNCGFFGSSATMNLCSNCYGDLCLKQQQQ 46


>At3g54100.1 68416.m05981 expressed protein similar to axi 1
           [Nicotiana tabacum] GI:559921; contains Pfam profile
           PF03138: Plant protein family
          Length = 638

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 195 DYFGNPQWQGYCSKCHREQMRGKEKQR 275
           +++ NPQ    C+K H EQ+R +   R
Sbjct: 600 NFYANPQPDCICNKSHPEQLRKQSSLR 626


>At2g40340.1 68415.m04974 AP2 domain-containing transcription
           factor, putative (DRE2B) Similar to DRE2B (GP:3738232)
           [Arabidopsis thaliana]
          Length = 341

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 231 SKCHREQMRGKEKQRKPHRL 290
           S+C +E+++GKE+ R+ H L
Sbjct: 186 SQCIKEELKGKEEVREEHNL 205


>At3g62380.1 68416.m07007 hypothetical protein weak similarity to S
           locus F-box (SLF)-S2 protein [Antirrhinum hispanicum]
           GI:13161526
          Length = 325

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 260 ASHLFPVTFRAVPLPLWVAKIITSI 186
           A  L   TFR VPLP W  K   S+
Sbjct: 206 AIDLHTETFRYVPLPSWYTKYCKSV 230


>At3g49290.1 68416.m05387 expressed protein
          Length = 312

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 239 SQGTDERQRKAEKAS-SFTSTLPRSDQRK 322
           SQ +  RQ     A+ SFTST+P+ +Q K
Sbjct: 187 SQSSSPRQPPQRSATFSFTSTIPKKEQDK 215


>At1g22100.1 68414.m02763 hypothetical protein
          Length = 457

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 57  FSCYNRN*SFFAYKLIETIRSYKYMITSKMPSLRID 164
           FSC++ N         E + S + +ITS+ PS R D
Sbjct: 112 FSCHDSNAMILLLVAKEFLESVEKIITSQRPSWRAD 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,394,283
Number of Sequences: 28952
Number of extensions: 148670
Number of successful extensions: 375
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)