Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021149
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    29   0.79 
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    27   4.2  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   9.7  

>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 501 NSKAHGPSRSKTFLSLARLRSNHYRLVKCSSTRLETNRPDHIELGVRIDI 352
           NS +      K+F+ L R  +  Y+ +  SST +  + P+H E G  ID+
Sbjct: 199 NSWSESDQEKKSFIDLVRSTAKSYKPLPPSSTGV--SLPEHDEAGDNIDV 246


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 35  EIQRIKREIHSQSVERGVSECCRLEQAYTKRREQLARDHEK 157
           EI+RI R  H  +  +  +E  R E    KRRE+  R H K
Sbjct: 377 EIRRIARHRHLPTNVKKAAEIKREEINSLKRREENIRRHSK 417


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/48 (20%), Positives = 23/48 (47%)
 Frame = +3

Query: 495 YCLSMFDSSPPHVAGSSPYISWHEMLSSIMLHSTIREIFLSAM*TSAY 638
           Y +  FD     +      ++W  +L +++ + ++R IF  +   S+Y
Sbjct: 338 YIIGAFDKRISQIILDGEMVTWDPVLETVIPYGSLRSIFEDSSSHSSY 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,960
Number of Sequences: 5004
Number of extensions: 42842
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)