Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021149
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0459 + 29217728-29217919,29218095-29218190,29219785-292198... 31 1.4
11_01_0521 + 4083594-4083763,4083765-4083963,4084059-4084244,408... 30 2.5
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 29 3.3
07_03_0394 - 17633753-17636788 29 4.4
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293... 29 4.4
11_01_0680 - 5554012-5554028,5555525-5555678,5555790-5555951,555... 28 7.7
06_01_0733 + 5405889-5405922,5405923-5405975,5406430-5406543,540... 28 7.7
>02_05_0459 +
29217728-29217919,29218095-29218190,29219785-29219895,
29219984-29220293,29220745-29220835,29220976-29221285,
29221469-29221617,29221914-29222418
Length = 587
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +2
Query: 2 ALAKKTNRDKDEIQRIKREIHSQSVERGVSECCRLEQAYTKRREQLARDHEK--LLQMLL 175
A A+K D DE+ R + + ++ R +E ++++A R+E++ R EK L +ML
Sbjct: 116 AEAQKLRYD-DELARKRMQTEREAQRRQDAELVKMQEAAALRKEEVRRTTEKKILEKMLE 174
Query: 176 KHRDQELVKLDRLCGGA 226
+++ L+K + A
Sbjct: 175 DEKEKALLKKQNIQANA 191
>11_01_0521 +
4083594-4083763,4083765-4083963,4084059-4084244,
4085834-4086025,4086979-4087200,4089238-4089444,
4089681-4090082,4090201-4090230,4090307-4090318
Length = 539
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1
Query: 423 VKCSSTRLETNRPDHIELGVRIDIDTLIDRQRAS 322
VK ++++LETN DH L RI + +RQ AS
Sbjct: 250 VKSNTSQLETNNNDHHSLENRIQVLESTERQNAS 283
>03_02_0568 +
9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 29.5 bits (63), Expect = 3.3
Identities = 22/74 (29%), Positives = 38/74 (51%)
Frame = +2
Query: 11 KKTNRDKDEIQRIKREIHSQSVERGVSECCRLEQAYTKRREQLARDHEKLLQMLLKHRDQ 190
KKT RDK E + + ++E E LE+A+++ L ++ E ++ LL H +Q
Sbjct: 388 KKTMRDKIEYLETQNKELKMNIESCKKEYLDLEEAHSRANISL-KEKEFIISNLL-HAEQ 445
Query: 191 ELVKLDRLCGGAPE 232
+V+ + GA E
Sbjct: 446 SIVERAKDIRGALE 459
>07_03_0394 - 17633753-17636788
Length = 1011
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 573 RASRAKICMDLSRLRGAANYRTSTNSKAHGPSRSKTFLSLAR 448
RAS +K C+ R+ G + S + H P +T LS AR
Sbjct: 79 RASNSKTCLGKVRISGTSFVSHSDATPLHYPLEKRTILSRAR 120
>04_04_1104 -
30928475-30928501,30929008-30929110,30929287-30929340,
30929803-30929895,30930063-30930140,30930416-30930527,
30930618-30930756,30930823-30930910,30930984-30931079,
30931675-30931781,30931874-30932009,30932089-30932186,
30932954-30933047,30933132-30933301,30933749-30933819,
30936066-30936194,30936552-30936654,30936764-30936907,
30937123-30937245,30937482-30937563,30939044-30939120,
30939261-30939315,30939365-30939443,30939544-30939620,
30939739-30939869,30939947-30940120,30940245-30940310,
30940937-30941572
Length = 1113
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 275 HRFLNKTSLGRTASPPAR-PRTDGPASRAP 189
H FL ++ A+PP P GPASRAP
Sbjct: 138 HNFLASSNNNAAAAPPDNVPPASGPASRAP 167
>11_01_0680 -
5554012-5554028,5555525-5555678,5555790-5555951,
5556130-5557148,5559808-5559835,5560996-5561079,
5561442-5561654,5562267-5562569
Length = 659
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 181 PRSGAREAGPSVRGRAGGLAVLPSDVLFRNL 273
P+ G R A P+ R AGG A +PS +L R+L
Sbjct: 202 PKKGFRSAAPA-REAAGGEAFVPSLILTRSL 231
>06_01_0733 +
5405889-5405922,5405923-5405975,5406430-5406543,
5407464-5407523,5408139-5408217,5410661-5410728,
5411198-5411302,5411887-5411994,5412087-5412279,
5412818-5412897,5413309-5413536,5414112-5414252,
5414341-5414466,5414561-5414611,5414879-5414956,
5415814-5415960,5416685-5417179
Length = 719
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +2
Query: 2 ALAKKTNRDKDEIQRIKREIHSQSVERGVSECCR--LEQAYTKRREQLARDHEKLLQMLL 175
AL+ K + + +R+ E+ S +R S R +++TKR E R L+ +L
Sbjct: 602 ALSVKVTKLMKQNERLSSELASGRNQRRGSHGPRGARRESHTKRYEPARRGDMNALEAML 661
Query: 176 KHRDQELVKL 205
K +DQ +L
Sbjct: 662 KEKDQRQAEL 671
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,073,982
Number of Sequences: 37544
Number of extensions: 300722
Number of successful extensions: 875
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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