Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021149
         (813 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    28   0.39 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   2.1  
AF316636-1|AAG45164.1|  221|Anopheles gambiae glutathione S-tran...    23   8.5  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 27.9 bits (59), Expect = 0.39
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 29  KDEIQRIKREIHSQSVERGVSECCRLEQAYTKRREQLARD-HEKLLQMLLKHRDQELVKL 205
           KDE+ RI+R       ER +++C    +A T  +E L  + H++L+  L      E+  L
Sbjct: 743 KDELSRIER--FRSPKERSLAQCKANLEAMTSTKEGLENELHQELMSQLSVQDQHEVDSL 800

Query: 206 D 208
           +
Sbjct: 801 N 801


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 11   KKTNRDKDEIQRIKREIHS--QSVERGVSECCRLEQAYTKRREQL 139
            +   + KD+I  ++ E+ +   ++ +G  E  +LE+   K RE+L
Sbjct: 928  RNVQKSKDKINSMEDEVEAAQSAIRKGNDERTQLEEEANKLREEL 972


>AF316636-1|AAG45164.1|  221|Anopheles gambiae glutathione
           S-transferase E2 protein.
          Length = 221

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -1

Query: 453 ARLRSNHYRLVKCSSTRLETNRPDHIELGVRIDIDTLID 337
           AR+R N  R++    + +  +R ++++    +  DTL+D
Sbjct: 109 ARMRFNFERILFFGKSDIPEDRVEYVQKSYELLEDTLVD 147


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,930
Number of Sequences: 2352
Number of extensions: 11017
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86071221
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)