Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021149
         (813 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like pr...    31   0.74 
U39650-4|AAK39186.1|  944|Caenorhabditis elegans Apical junction...    29   3.0  
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction...    29   3.0  
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction...    29   3.0  
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction...    29   3.0  
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like
           protein protein 8 protein.
          Length = 594

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +2

Query: 11  KKTNRDKDEIQRIKREIHSQSVE-RGVSECCRLEQAYTKRREQLARDHEKLLQMLLKHRD 187
           +K ++ KD+I   +REI++Q  E   + +  RLE++     E+      +  Q  ++ RD
Sbjct: 358 EKLDKLKDDISSREREINAQKEEVNRIKDSLRLEKSKRNELEEEVLRQRRCAQEEIESRD 417

Query: 188 QEL 196
           QE+
Sbjct: 418 QEI 420


>U39650-4|AAK39186.1|  944|Caenorhabditis elegans Apical junction
           molecule protein1, isoform b protein.
          Length = 944

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = +2

Query: 11  KKTNRDKDEIQRIKREIHSQSVERGVSECCRLEQAYTKRREQLARDHEKLLQMLLKHRDQ 190
           ++  R++ E +R +RE      +R + E   LE+   +RRE  AR+ ++L     +  D+
Sbjct: 431 ERIKRERIERERREREEKKAEEDRLLRERLELERIERERRELEARERQELELQRREAEDR 490

Query: 191 ELVKLD 208
           E  +L+
Sbjct: 491 ERQRLE 496


>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
           molecule protein1, isoform c protein.
          Length = 1148

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = +2

Query: 11  KKTNRDKDEIQRIKREIHSQSVERGVSECCRLEQAYTKRREQLARDHEKLLQMLLKHRDQ 190
           ++  R++ E +R +RE      +R + E   LE+   +RRE  AR+ ++L     +  D+
Sbjct: 431 ERIKRERIERERREREEKKAEEDRLLRERLELERIERERRELEARERQELELQRREAEDR 490

Query: 191 ELVKLD 208
           E  +L+
Sbjct: 491 ERQRLE 496


>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
           molecule protein1, isoform d protein.
          Length = 1439

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = +2

Query: 11  KKTNRDKDEIQRIKREIHSQSVERGVSECCRLEQAYTKRREQLARDHEKLLQMLLKHRDQ 190
           ++  R++ E +R +RE      +R + E   LE+   +RRE  AR+ ++L     +  D+
Sbjct: 431 ERIKRERIERERREREEKKAEEDRLLRERLELERIERERRELEARERQELELQRREAEDR 490

Query: 191 ELVKLD 208
           E  +L+
Sbjct: 491 ERQRLE 496


>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
           molecule protein1, isoform a protein.
          Length = 1480

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = +2

Query: 11  KKTNRDKDEIQRIKREIHSQSVERGVSECCRLEQAYTKRREQLARDHEKLLQMLLKHRDQ 190
           ++  R++ E +R +RE      +R + E   LE+   +RRE  AR+ ++L     +  D+
Sbjct: 431 ERIKRERIERERREREEKKAEEDRLLRERLELERIERERRELEARERQELELQRREAEDR 490

Query: 191 ELVKLD 208
           E  +L+
Sbjct: 491 ERQRLE 496


>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
           protein Y108G3AL.7 protein.
          Length = 1192

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 26  DKDEIQRIKREIHSQS--VERGVSECCRLEQAYTKRREQLARDHEKLLQMLLKHR 184
           +++E  R+K E   +    +  + E  RLE+ Y     ++  +HEK +  ++ HR
Sbjct: 331 EREEKLRLKEENREKKRREKARIMELKRLEKVYRTSNARIQENHEKSMTQIISHR 385


>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical
           protein F48F5.1 protein.
          Length = 1291

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 11  KKTNRDKDEIQRIKREIHSQSVERGVSECCRLEQAYTKRREQLARDHEK 157
           ++  R+KDE+Q   R    +S  R ++E  + EQ   ++  +L  D EK
Sbjct: 836 EQNQREKDELQAKLRADQEKSEARKIAEKKKDEQNQKEKEAKLRADQEK 884


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,266,748
Number of Sequences: 27780
Number of extensions: 245881
Number of successful extensions: 717
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)