Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021149
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.27 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.6 bits (56), Expect = 0.27
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +2

Query: 14  KTNRDKD-EIQRIKREIHSQSVERGVSECCRLEQAYTKRREQLARDHEKLLQMLLKHRDQ 190
           K + D D  +  ++RE    S E   S     +    +R E++A D   + Q LL+ + +
Sbjct: 303 KLDEDADGAVSPLRREKDRGSREYPTSNATDTDGT-KERTEEVALDRTPVTQGLLRVKKE 361

Query: 191 ELVKLDRLCGGAP 229
           E ++    CGG P
Sbjct: 362 EELQEAPSCGGGP 374


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 373 LYVIGPIRLESRAAAFN*SIVIRSETRKGQERLRPTRTVSLTV 501
           LY+   +R++S + A N    +  ET++ Q R   TR +S  V
Sbjct: 224 LYIRIGLRIQSDSLAENVEGYVHGETKQVQSRKTITRMLSAVV 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,161
Number of Sequences: 438
Number of extensions: 3199
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)