Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021149
(813 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 36 0.024
At5g26770.2 68418.m03191 expressed protein 31 0.91
At5g26770.1 68418.m03190 expressed protein 31 0.91
At3g54710.1 68416.m06053 expressed protein 31 0.91
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 29 2.8
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 29 3.7
At4g22980.1 68417.m03316 expressed protein ; expression supporte... 28 6.4
At2g40030.1 68415.m04919 DNA-directed RNA polymerase alpha subun... 28 6.4
At1g63870.1 68414.m07233 disease resistance protein (TIR-NBS-LRR... 28 8.5
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 36.3 bits (80), Expect = 0.024
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = +2
Query: 2 ALAKKTNRDKDEIQRIKREIHSQSVERGVSECCRLEQAYTKRREQLARDHE---KLLQML 172
A ++ R+K+E KRE Q ER E R E+ KRRE+ AR E K + +
Sbjct: 516 ARKREEEREKEEEMAKKREEERQRKEREEVERKRREEQERKRREEEARKREEERKREEEM 575
Query: 173 LKHRDQELVKLDR 211
K R+QE + +R
Sbjct: 576 AKRREQERQRKER 588
>At5g26770.2 68418.m03191 expressed protein
Length = 335
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +2
Query: 29 KDEIQRIKREIHSQSVERGVSECCRLEQAYTKRREQLARDHEKLLQMLLKHRDQELVKL 205
++E+ RI+REI + G C L K E+++ + + + MLL +D+E+ KL
Sbjct: 171 REEVMRIEREITEAVAKSGKGTECELR----KLLEEVSPKNFERMNMLLAVKDEEIAKL 225
>At5g26770.1 68418.m03190 expressed protein
Length = 335
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +2
Query: 29 KDEIQRIKREIHSQSVERGVSECCRLEQAYTKRREQLARDHEKLLQMLLKHRDQELVKL 205
++E+ RI+REI + G C L K E+++ + + + MLL +D+E+ KL
Sbjct: 171 REEVMRIEREITEAVAKSGKGTECELR----KLLEEVSPKNFERMNMLLAVKDEEIAKL 225
>At3g54710.1 68416.m06053 expressed protein
Length = 486
Score = 31.1 bits (67), Expect = 0.91
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -1
Query: 561 AKICMDLSRLRGAANYRTSTNSKAHGPSRSKTF 463
+K C++L+ G N STNS A GPSRS F
Sbjct: 265 SKRCIELTPEGGDDNSLRSTNSLARGPSRSLNF 297
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 23 RDKDEIQRIKREIHSQSVE--RGVSECCRLEQAYTKRREQLARDHEKLLQMLLKHRD 187
++ +EI + K ++ Q VE +SE L KRRE R+ + L + K +D
Sbjct: 707 KESEEIAKHKDKLKEQQVEMHNDISELSTLSINLKKRREVFGRERSRFLAFVQKLKD 763
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +2
Query: 2 ALAKKTN-RDKDEIQRIKREIHSQSVERGVSECCRLEQAYTKRREQLARDHEKLLQMLLK 178
A AK N R +DE+ R + + +++ R +E +++A + R+E+ E+ +Q +
Sbjct: 145 AQAKAQNLRYEDELARKRMQTDNEAQRRHNAELVSMQEASSIRKEKARIATEEQIQAQQR 204
Query: 179 HRDQELVKLDR 211
++E +L+R
Sbjct: 205 ETEKERAELER 215
>At4g22980.1 68417.m03316 expressed protein ; expression supported
by MPSS
Length = 559
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 459 SLARLRSNHYRLVKCSSTRLETNRPDHI 376
SL RLR++ Y L+ L+TN+ DH+
Sbjct: 57 SLPRLRTSFYDLITAFPDYLQTNQADHL 84
>At2g40030.1 68415.m04919 DNA-directed RNA polymerase alpha subunit
family protein contains InterPro accession IPR000722:
RNA polymerase, alpha subunit
Length = 888
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 683 RINFRSLTIDRRTLNVRRSLHCRKEYLSDSA 591
++NF++ T DRR + HC K + ++A
Sbjct: 816 KVNFQNTTNDRRVILYLNECHCGKRFCQENA 846
>At1g63870.1 68414.m07233 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1031
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 549 MDLSRLRGAANYRTSTNSKAHGPSRSKTFLSLARLRSN 436
MD + NYR + S HGP+ KT LS R + N
Sbjct: 4 MDSPSSISSCNYRFNVFSSFHGPNVRKTLLSHMRKQFN 41
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,367,247
Number of Sequences: 28952
Number of extensions: 226356
Number of successful extensions: 655
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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