Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021148
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 45 1e-05
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 39 6e-04
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 28 1.2
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 28 1.6
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 28 1.6
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 27 2.1
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 27 2.7
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 3.6
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c... 26 4.8
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 26 4.8
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 26 4.8
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 8.3
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 8.3
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 44.8 bits (101), Expect = 1e-05
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = +2
Query: 92 LTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPN 253
+++E EL F F+ + + + + NP + V+FK+KTTAPK YCVRPN
Sbjct: 1 MSVECSGELFFYPPFTTMSKELISVH----NPNPEPVIFKVKTTAPKHYCVRPN 50
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 39.1 bits (87), Expect = 6e-04
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +2
Query: 170 MRLTNPTNDTVLFKIKTTAPKKYCVRPN 253
+ L N + FK+KTTAPK+YCVRPN
Sbjct: 23 LELRNTAPYPIGFKVKTTAPKQYCVRPN 50
Score = 35.1 bits (77), Expect = 0.010
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +1
Query: 256 GVLAPNSKQEIAITPQPVYLDPNENHK--HKFMVQSV-IAPEGK-TNIDQVWKEISPEQL 423
G + NS + + QP+ +P K KF+VQS + PE + +I +W ++S +
Sbjct: 52 GRIEANSAVSVEVILQPLDHEPAPGTKCRDKFLVQSTELKPELQGMDIADIWTQVSKANI 111
Query: 424 MDYKLKCVF-ETPRGTN 471
+ K++CV+ E P N
Sbjct: 112 SERKIRCVYSEGPSTAN 128
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 163 NLHETNEPDKRYSAIQDQNNSTKEILRASQFGVLAPNSKQ 282
NL PD +Y I D++++ K IL S G+L N K+
Sbjct: 227 NLALAVHPDLQYIKILDKDSNKKYILMESCLGILYKNPKK 266
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 301 QPVYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISP 414
Q +Y + +EN + FM+ +++ +ID +W +SP
Sbjct: 305 QYMYKEDDENLESYFMMVALLIKYNFISIDNIWAHLSP 342
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/95 (18%), Positives = 40/95 (42%)
Frame = +1
Query: 205 IQDQNNSTKEILRASQFGVLAPNSKQEIAITPQPVYLDPNENHKHKFMVQSVIAPEGKTN 384
I D + ++ +R S V PN Q + ++ NE+H + +++ V+ G +
Sbjct: 515 IHDLSRGNRDKIRNSILSVYDPNVSQHRVPS-----INGNESHSNVHVIRQVVNSTGPVS 569
Query: 385 IDQVWKEISPEQLMDYKLKCVFETPRGTNLNDSGD 489
+DQ + +Q ++ + + G D +
Sbjct: 570 LDQSCNLLPTDQFVERRNFMFYSDDGGFQATDENN 604
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +2
Query: 17 IFFLNLLNFANEILCL*YNKMPNQVLTIEPQNELKFKVNFSGLFEHG 157
+F + +F ++ + L KMPN+VLT E N+++ + +FS +G
Sbjct: 837 VFEVPKSHFVHKSMLLRGVKMPNRVLTPEDINQVRAERSFSSRRNNG 883
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 307 VYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISPE-QLMDY 432
V+ NE + + + EG TN+++VW +I+ + Q D+
Sbjct: 83 VFAKKNEGDLLQNAIYELSQAEGSTNVNEVWNDITEDMQSQDF 125
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 328 NHKHKFM-VQSVIAPEGKTNIDQVWKEISPEQLMDYKLKCVFETPRGT 468
NH F V+ I P G TN+D +W+ +L+D L +F T T
Sbjct: 1160 NHPFIFEDVERAIDPSG-TNVDLLWRAAGKFELLDRILPKLFLTGHKT 1206
>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 152 HGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNL 256
H T +++ NP N+ V I PK PNL
Sbjct: 5 HNIPTAIQIQNPINNNVSVTISDQLPKPSANNPNL 39
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/33 (27%), Positives = 23/33 (69%)
Frame = +1
Query: 229 KEILRASQFGVLAPNSKQEIAITPQPVYLDPNE 327
+E + FGV+APN+++++ Q ++++P++
Sbjct: 173 EEWMVGGSFGVMAPNNEEDVDELLQLLHINPDQ 205
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 313 LDPNENHKHKFMVQSVIAPEGKTNIDQV 396
L N+NH + V +V+ +G TN+D +
Sbjct: 168 LSQNKNHFAQLAVDAVLRLKGSTNLDNI 195
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -3
Query: 207 NSTVSFVGFVSLM*VVQPCSKSPEKLTLNFNSFCGSIVSTWLGILLYYKHS 55
+ TVSF G S + P K T NF + +VS L + Y++S
Sbjct: 164 SKTVSFYGPTSAYDLSLPDITKDNKTTWNFQASYSPMVSECLKLFFRYQYS 214
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 169 HETNEPDKRYSAIQDQNNSTKE 234
HE +E KR ++++NN KE
Sbjct: 620 HEFDELQKRLQTLEEENNKAKE 641
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,849
Number of Sequences: 5004
Number of extensions: 59693
Number of successful extensions: 164
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -