Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021148
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0361 + 3165516-3165564,3166316-3166386,3166481-3166562,316... 50 1e-06
02_05_0103 - 25847224-25847331,25847785-25847862,25848487-258485... 48 6e-06
04_04_0742 + 27706150-27706198,27706306-27706376,27706490-277065... 43 2e-04
02_05_0213 + 26815889-26816475,26817718-26817788,26817985-268180... 34 0.100
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 33 0.17
03_06_0778 - 36188675-36188922,36189154-36189214,36189531-361896... 32 0.53
10_08_0845 - 20968051-20968188,20968769-20968843,20969399-209694... 30 1.6
07_01_1104 - 10160493-10160599,10160632-10160637,10160930-101609... 30 1.6
04_04_1002 - 30025914-30026021,30026116-30026297,30026626-300269... 29 2.8
12_01_1073 + 11135853-11137388,11137627-11137846,11137990-111381... 29 5.0
07_03_0883 + 22280381-22280708,22282008-22282078,22282228-222823... 29 5.0
07_01_0602 + 4485753-4486751 28 6.6
02_05_0154 - 26330109-26330189,26330274-26330411,26330518-263306... 28 6.6
03_01_0418 - 3211687-3211933,3212016-3212164,3212443-3212551,321... 28 8.7
>08_01_0361 +
3165516-3165564,3166316-3166386,3166481-3166562,
3166677-3166792,3166892-3167053,3167158-3167202,
3168097-3168174,3168632-3168742
Length = 237
Score = 50.4 bits (115), Expect = 1e-06
Identities = 29/60 (48%), Positives = 38/60 (63%)
Frame = +2
Query: 77 MPNQVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNL 256
M L I+P +EL F F L + C+ M+LTN T+ V FK+KTT PK+YCVRPN+
Sbjct: 1 MSASFLEIQP-SELSFP--FELLKQSSCS--MQLTNKTDHYVAFKVKTTNPKQYCVRPNI 55
Score = 41.9 bits (94), Expect = 5e-04
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 6/136 (4%)
Frame = +1
Query: 175 TNEPDKRYSAIQDQNNSTKEILRASQFGVLAPNSKQEIAITPQPVY-LDPNENHKHKFMV 351
TN+ D Y A + + + K+ GV+ P S ++ +T Q P+ K KF+V
Sbjct: 30 TNKTD-HYVAFKVKTTNPKQYCVRPNIGVVLPGSTCDVTVTMQAQREAPPDMQCKDKFLV 88
Query: 352 QSVIAPEGKTNID---QVWKEISPEQLMDYKLKCVF--ETPRGTNLNDSGDNAAQNDAPR 516
QSV A G T D +++ +++ + + ++KL+ V+ T DS ++ +
Sbjct: 89 QSVAAENGATTQDISAEMFNKVAGKVVEEFKLRVVYVPTTTSSAMPEDSEQGSSARPFAQ 148
Query: 517 KELQSQKTLSLPLRRS 564
+ T+ P+ RS
Sbjct: 149 ENGIHNSTMPQPVFRS 164
>02_05_0103 -
25847224-25847331,25847785-25847862,25848487-25848528,
25848641-25848763,25848856-25848971,25849062-25849143,
25849233-25849303,25849632-25849689
Length = 225
Score = 48.4 bits (110), Expect = 6e-06
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = +2
Query: 170 MRLTNPTNDTVLFKIKTTAPKKYCVRPN 253
+ LTN T++ V FK+KTT+PKKYCVRPN
Sbjct: 30 LHLTNKTDEYVTFKVKTTSPKKYCVRPN 57
>04_04_0742 +
27706150-27706198,27706306-27706376,27706490-27706571,
27706695-27706810,27706899-27707075,27707148-27707195,
27707786-27707863,27708724-27708837
Length = 244
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/57 (43%), Positives = 33/57 (57%)
Frame = +2
Query: 77 MPNQVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVR 247
M N +L + P +ELK + + C M+LTN TN V FK+KTT P+KY VR
Sbjct: 1 MSNTLLRVHP-SELKIPYEYKR--KRSCC--MQLTNKTNQYVAFKVKTTNPRKYSVR 52
Score = 36.7 bits (81), Expect = 0.019
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Frame = +1
Query: 175 TNEPDKRYSAIQDQNNSTKEILRASQFGVLAPNSKQEIAITPQ-PVYLDPNENHKHKFMV 351
TN+ ++ Y A + + + ++ G+L P S +I +T Q PV + + + K KF+V
Sbjct: 30 TNKTNQ-YVAFKVKTTNPRKYSVRHACGILPPRSSCDITVTMQAPVEMLSDYHCKDKFLV 88
Query: 352 QSVIAPEGKTNID---QVWKEISPEQLMDYKLKCVFETPRGTNLNDSGDNAAQNDA-PRK 519
QSV G T D +++ + + ++KL+ V+ + + + DA P+
Sbjct: 89 QSVAVGYGATMRDFVPELFTKAPGRVIEEFKLRVVYVAANPPSPVPEEEEEEEEDASPQS 148
Query: 520 ELQS 531
E+ S
Sbjct: 149 EVMS 152
>02_05_0213 +
26815889-26816475,26817718-26817788,26817985-26818073,
26818910-26818991,26819089-26819204,26819290-26819451,
26819531-26819680,26819969-26820037,26820375-26820491
Length = 480
Score = 34.3 bits (75), Expect = 0.100
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +1
Query: 256 GVLAPNSKQEIAITPQPVYLDPNE-NHKHKFMVQSVIAPEGKTNID---QVWKEISPEQL 423
G++ P I I+ QP P + N K KF++QSV+ +G T D ++ + + + +
Sbjct: 265 GIVLPRGSCGITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQKDIHSDMFSKEAGKVV 324
Query: 424 MDYKLKCVF 450
++KL+ V+
Sbjct: 325 EEFKLRVVY 333
>01_06_1801 - 39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 33.5 bits (73), Expect = 0.17
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Frame = +1
Query: 154 WLHNLHETNEPDKRYSA-IQDQNNSTKEILRASQFGVLAPNSKQEIAITPQPVYLDP--N 324
W L++ + P RY A I+ + + K++ S +A + +++ Q + LD N
Sbjct: 959 WGLTLYDLHFPKDRYDAEIKKLHENLKQLEDNSDNSSIAISRRKKDKERIQDL-LDKLNN 1017
Query: 325 ENHKHKFMVQSVIAPEGKTNIDQVWKEISPEQL---MDYKLKCVF 450
E+HKH+ + SV+ G+ + W SP+ L M++ +C+F
Sbjct: 1018 ESHKHQQHIASVLQRLGREKVK--WLNSSPDALKINMEFFQRCIF 1060
>03_06_0778 -
36188675-36188922,36189154-36189214,36189531-36189635,
36189731-36189835,36189916-36189997,36190337-36190536,
36190635-36190796,36190926-36191035,36191133-36191256,
36191408-36191674
Length = 487
Score = 31.9 bits (69), Expect = 0.53
Identities = 20/61 (32%), Positives = 25/61 (40%)
Frame = -1
Query: 623 RKSEDRDAPVPACRLTQAQ*LLLSGRLSVFCDCNSFLGASFWAALSPESLRLVPRGVSKT 444
R+ E VPA Q L L G + VFC L A P+S + RG+ T
Sbjct: 69 RERESLATAVPAAARLAGQPLELKGNIRVFCRVRPLLPNESGAVAYPKSGENLGRGIELT 128
Query: 443 H 441
H
Sbjct: 129 H 129
>10_08_0845 -
20968051-20968188,20968769-20968843,20969399-20969425,
20969512-20969649,20969765-20969880,20970000-20970081,
20970105-20970226,20970314-20970368
Length = 250
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +2
Query: 209 KIKTTAPKKYCVRPN 253
K+KTT+P+KY VRPN
Sbjct: 59 KVKTTSPRKYFVRPN 73
>07_01_1104 -
10160493-10160599,10160632-10160637,10160930-10160975,
10161053-10161190,10161275-10161679,10163193-10163330,
10163401-10163482,10163596-10163943,10164294-10164655,
10165154-10165209,10166428-10166558,10166564-10166628,
10169191-10169631
Length = 774
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/71 (22%), Positives = 29/71 (40%)
Frame = +1
Query: 190 KRYSAIQDQNNSTKEILRASQFGVLAPNSKQEIAITPQPVYLDPNENHKHKFMVQSVIAP 369
KR ++IQ Q N + LR + G + +P P E+ + ++
Sbjct: 282 KRQASIQKQANFMQHFLRGKKGGNMESLGNHHSMRSPHPNVFSKIEDSSATSAMDCTLSE 341
Query: 370 EGKTNIDQVWK 402
E + D++WK
Sbjct: 342 ENQLRSDEIWK 352
>04_04_1002 -
30025914-30026021,30026116-30026297,30026626-30026908,
30026992-30027630
Length = 403
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/76 (17%), Positives = 35/76 (46%)
Frame = +1
Query: 190 KRYSAIQDQNNSTKEILRASQFGVLAPNSKQEIAITPQPVYLDPNENHKHKFMVQSVIAP 369
++ + + ++ ++K+ L F V PN + + + P+ +Y + + HK +
Sbjct: 212 EKITCLLKRSLTSKQTLTGYYFDVPNPNDEANLYVLPESLYSEQDAEVDHKLNNMKIKVL 271
Query: 370 EGKTNIDQVWKEISPE 417
+ K N ++ E+ +
Sbjct: 272 QRKNNTSLLYAEVGED 287
>12_01_1073 + 11135853-11137388,11137627-11137846,11137990-11138178,
11138257-11138457,11138547-11139246,11163479-11164106
Length = 1157
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +2
Query: 446 SLKLRVALILTILAIMQPRTMHQEKXXXXXXXXXXXXGGVT--ALASVGRRGRARLGPHS 619
SL++ + + I +P ++ GG+ +AS+ RGR +LGP
Sbjct: 980 SLRMPAKRVSGMSTISEPMDTEPKQSDTKLSRARELEGGLLHQPIASLAVRGRGKLGPKF 1039
Query: 620 YGP 628
YGP
Sbjct: 1040 YGP 1042
>07_03_0883 +
22280381-22280708,22282008-22282078,22282228-22282345,
22282406-22282521,22283946-22284023,22284123-22284242,
22284332-22284391
Length = 296
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 170 MRLTNPTNDTVLFKIKTTAPKKYCVRP 250
+R+ N + V FK +TTAPK +RP
Sbjct: 120 IRIKNTSKSHVAFKFQTTAPKSCFMRP 146
>07_01_0602 + 4485753-4486751
Length = 332
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 572 LASVGRRGRARLGPHSYGP 628
+AS+G GR +LGP YGP
Sbjct: 180 MASLGVAGRGKLGPKFYGP 198
>02_05_0154 -
26330109-26330189,26330274-26330411,26330518-26330633,
26330782-26330863,26332706-26332770,26333016-26333112,
26334066-26334136,26334242-26334304,26334379-26334431,
26335143-26335192,26336295-26336340,26337014-26337019,
26337381-26337511,26337594-26337680,26338472-26338849
Length = 487
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +2
Query: 212 IKTTAPKKYCVRPN 253
+KTT+P+KY VRPN
Sbjct: 350 VKTTSPRKYFVRPN 363
>03_01_0418 -
3211687-3211933,3212016-3212164,3212443-3212551,
3212650-3212840,3212967-3213102,3213216-3213716,
3213819-3213923,3214008-3214095,3214195-3214266,
3214692-3214762,3215726-3216008,3216388-3216463
Length = 675
Score = 27.9 bits (59), Expect = 8.7
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 237 IACVPIWSSGAKFETRNRNYSATCIFGPQ*KPQA*IY-GPKCNSSRRKNQH*SSVEGDKP 413
IAC W+ GA N C F + + Y K +SSRR N +++E + P
Sbjct: 8 IAC---WTEGAGCRHPMENLGERCAFQLRLHTFSSPYKSTKSSSSRRGNDQSTTLESNTP 64
Query: 414 RAT 422
RAT
Sbjct: 65 RAT 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,950,093
Number of Sequences: 37544
Number of extensions: 381015
Number of successful extensions: 1077
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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