Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021148
(725 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3540| Best HMM Match : RF-1 (HMM E-Value=2.1) 65 5e-11
SB_35371| Best HMM Match : Motile_Sperm (HMM E-Value=1.1e-21) 62 6e-10
SB_25446| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_32117| Best HMM Match : DUF1143 (HMM E-Value=7.7) 33 0.31
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 29 3.8
SB_22307| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_41369| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_23057| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_57148| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_46196| Best HMM Match : DUF1029 (HMM E-Value=3.6) 28 8.9
SB_37437| Best HMM Match : DUF16 (HMM E-Value=1.9) 28 8.9
SB_13345| Best HMM Match : Hormone_4 (HMM E-Value=3.9) 28 8.9
>SB_3540| Best HMM Match : RF-1 (HMM E-Value=2.1)
Length = 395
Score = 65.3 bits (152), Expect = 5e-11
Identities = 28/53 (52%), Positives = 35/53 (66%)
Frame = +1
Query: 301 QPVYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISPEQLMDYKLKCVFETP 459
QP DP E KHKFMVQ++ AP+ T+ + +W+E LMD KLKCVFE P
Sbjct: 134 QPFEYDPKEKAKHKFMVQTMFAPDNITDQENLWREADANTLMDSKLKCVFELP 186
>SB_35371| Best HMM Match : Motile_Sperm (HMM E-Value=1.1e-21)
Length = 305
Score = 61.7 bits (143), Expect = 6e-10
Identities = 30/56 (53%), Positives = 38/56 (67%)
Frame = +2
Query: 86 QVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPN 253
QVL ++P ELKF+ G F T+ +RL NP+ V FK+KTTAPK+YCVRPN
Sbjct: 6 QVLKLDPAIELKFR----GPFTEVVTSSLRLANPSEKRVCFKVKTTAPKRYCVRPN 57
>SB_25446| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 517
Score = 37.1 bits (82), Expect = 0.014
Identities = 21/58 (36%), Positives = 30/58 (51%)
Frame = +2
Query: 80 PNQVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPN 253
P LTI P EL F + S + L N ++ V +K+KTT+P+ Y VRP+
Sbjct: 285 PGNYLTIRPAEELVFIGSMSSA---EILQTLTLKNTSSTQVAYKVKTTSPESYRVRPS 339
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 334 KHKFMVQSVIAPEGKTNID--QVWKEISPEQLMDYKLKCVFETPRGTNLNDS 483
+ KF+V S+ TN + +WK++ +M+++L+C F T + +D+
Sbjct: 392 RDKFLVMSMRVTGANTNAEVASLWKKVHKSSIMEHRLRCKFMTSEQCDTHDA 443
>SB_32117| Best HMM Match : DUF1143 (HMM E-Value=7.7)
Length = 755
Score = 32.7 bits (71), Expect = 0.31
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 2/139 (1%)
Frame = +1
Query: 175 TNEPDKRYSAIQDQNNSTKEILRASQFGVLAPNSK-QEIAITPQPVYLDPNENHKHKFMV 351
T + K+ + ++ + ST R+ Q+G P S +E P L P++ KHK +
Sbjct: 41 TGDTPKKDNKLRRKATSTSSRRRSLQYGASTPKSLLRERYSCALPACLPPSKK-KHKLIA 99
Query: 352 QSVIAPEGKTNIDQVWKEISPEQ-LMDYKLKCVFETPRGTNLNDSGDNAAQNDAPRKELQ 528
+ ++ +E+ Q L+ L T +G + N G N +Q+ + + LQ
Sbjct: 100 DA--EDYYGLSLTSCLEELDISQTLLAEHLFLNLATLKGLDSNP-GSNVSQSLSAMRNLQ 156
Query: 529 SQKTLSLPLRRSYCACVSR 585
+ +LP + YC R
Sbjct: 157 ERNKPNLPWKLVYCLATRR 175
>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
Length = 3369
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 77 MPNQVLTIEPQNELKFKVNFS 139
+PN LTIEP ELKFK S
Sbjct: 1453 LPNVTLTIEPNVELKFKAGTS 1473
>SB_22307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 713
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = -3
Query: 150 SKSPEKLTLNFNSFCGSIVSTWLGILLYYKH-----SISLAKFNRLRKNIFPRCR 1
SK KL LN+ C ++TWL +YKH SI++ F RL +F CR
Sbjct: 544 SKMNSKLKLNY-VLC---LNTWL-FDQFYKHMIYTVSIAICSFGRLSSFVFAECR 593
>SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1933
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +1
Query: 475 NDSGDNAAQNDAPRKELQSQKTLSLPLRRSYCACVSRQA-GTGA--SRSSLLRSGEVDAS 645
+D D A Q D P + + +SLP+ A + +A G GA SR S +S E AS
Sbjct: 1228 SDVTDGALQGDRPSASIAGTECVSLPVHPGAAAVIQGEASGGGASYSRDSPGQSAESTAS 1287
>SB_41369| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = -3
Query: 516 SWCIVLGCIIARIVKISATRSFKDTL*LVVHQLLGAYLLPH-----LINVGFSFWSYYTL 352
+W + I R K A S D+ V+ L AYL H ++ V + +YYT
Sbjct: 130 AWLLKNSSITLRSSKDQAYMSAVDSWMGVLLPKLKAYLYEHGGPVIMVQVENEYGNYYTC 189
Query: 351 DHKFM 337
DH++M
Sbjct: 190 DHEYM 194
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 169 HETNEPDKRYSAIQDQNNSTKEILRASQFGVLAPNSK 279
+E NEP + + D+ ++KE+L ++ F +L N K
Sbjct: 185 YERNEPHEEDTVDNDEAPNSKELLTSNTFSLLLTNPK 221
>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1584
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 175 TNEPDKRYSAIQDQNNSTKEILRASQFGVLAPNSKQEIAITPQP 306
T +P + S IQ N+ + S ++AP TPQP
Sbjct: 808 TQQPSDQASYIQQPNDQASFTQQTSDQALIAPQPSDRALFTPQP 851
>SB_23057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 548 RLSVFCDCNSFLGASFWAALSPESLR 471
RL+ F CN FL AALSP R
Sbjct: 11 RLTTFAPCNCFLAKGIKAALSPVHFR 36
>SB_57148| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -3
Query: 306 RLRSNCDFLFRIWRQNSKLGRTQYFFGAVVLILNSTVSFVGFVSLM*VVQ 157
RL S+ D L R N+ LGR Q + L+ N S+VG S + +++
Sbjct: 86 RLPSSTDLLISDGRMNNLLGRLQKIEVTLKLLDNQRKSYVGIDSRVDLIE 135
>SB_46196| Best HMM Match : DUF1029 (HMM E-Value=3.6)
Length = 448
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = -3
Query: 150 SKSPEKLTLNFNSFCGSIVSTWLGILLYYKH-----SISLAKFNRLRKNIFPRCR 1
SK KL LN+ + ++TWL +YKH SI++ F RL +F CR
Sbjct: 279 SKMNSKLKLNYVLW----LNTWL-FDQFYKHMIYIVSIAICSFGRLSSFVFAECR 328
>SB_37437| Best HMM Match : DUF16 (HMM E-Value=1.9)
Length = 299
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -3
Query: 306 RLRSNCDFLFRIWRQNSKLGRTQYFFGAVVLILNSTVSFVGFVSLM*VVQ 157
RL S+ D L R N+ LGR Q + L+ N S+VG S + +++
Sbjct: 86 RLPSSTDLLISDGRMNNLLGRLQKIEVTLKLLDNQRKSYVGIDSRVDLIE 135
>SB_13345| Best HMM Match : Hormone_4 (HMM E-Value=3.9)
Length = 448
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = -3
Query: 150 SKSPEKLTLNFNSFCGSIVSTWLGILLYYKH-----SISLAKFNRLRKNIFPRCR 1
SK KL LN+ + ++TWL +YKH SI++ F RL +F CR
Sbjct: 279 SKMNSKLKLNYVLW----LNTWL-FDQFYKHMIYIVSIAICSFGRLSSFVFAECR 328
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,982,338
Number of Sequences: 59808
Number of extensions: 443933
Number of successful extensions: 1291
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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