Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021148
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.42 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.9  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   6.8  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   6.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 77   MPNQVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDT 199
            +P+Q+L I+  + LK     +GL   G   Y R+  PT  T
Sbjct: 1243 LPSQLLNIKTLHGLKVIPTPAGLKTTGAAVYARVIAPTTIT 1283


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 263 WRQIRNKKSQLLRNLYIWTPMK 328
           W Q+  K  +   N YIW P K
Sbjct: 131 WFQLSLKNIEPYNNYYIWHPGK 152


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 263 WRQIRNKKSQLLRNLYIWTPMK 328
           W Q+  K  +   N YIW P K
Sbjct: 131 WFQLSLKNIEPYNNYYIWHPGK 152


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +3

Query: 186 RQTIQCYSRSKQQHQRNIACVPIWSSGAKFETRNRNYSATCIF 314
           R+T +  SR + + +R+     I S+   ++  N NY++  ++
Sbjct: 282 RETSKGRSRDRTERERSKETKIISSNNYNYKNYNNNYNSKKLY 324


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +3

Query: 186 RQTIQCYSRSKQQHQRNIACVPIWSSGAKFETRNRNYSATCIF 314
           R+T +  SR + + +R+     I S+   ++  N NY++  ++
Sbjct: 293 RETSKGRSRDRTERERSKETKIISSNNYNYKNYNNNYNSKKLY 335


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 78  ILLYYKHSISLAKF 37
           ILLYY+ S++L+ F
Sbjct: 315 ILLYYRDSLALSVF 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,673
Number of Sequences: 438
Number of extensions: 3943
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)