Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021147
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    28   1.4  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.2  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    26   5.7  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    26   7.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.5  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    25   9.9  

>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 155 EPSLVFGPPCQLKQHVLLSLVQQL 226
           E SL+ GPP   K H L+ ++QQL
Sbjct: 226 ELSLIHGPPGTGKTHTLVEIIQQL 249


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 714 LFIIFKTYFMVDSKSFKTIFEKTVLFSCKCLN 809
           L+  + +YF + SKSF    ++ +++ C C N
Sbjct: 30  LYKTYTSYFFMSSKSFVRGVKRYLIYFCYCAN 61


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 216 FSNWPPICPRTRSQAQVSRGSSNEPGYV 299
           F  W    PRT   AQ   G ++ PGY+
Sbjct: 270 FQKWALSAPRTNILAQNREGIASLPGYI 297


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 619 ITTYANFSKLSTSFKHLTITNVQHSPHLGNPTSRVHTHYNCITESS 482
           +T     SK  TSFK + +T+   SP+  N +     + + ++ SS
Sbjct: 340 LTDDEQLSKSLTSFKQVNVTDASLSPNSHNTSDNEQNNEDYVSVSS 385


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +3

Query: 87   TAPSSWPCPPRTCPSWSQPAGRPSLHWCSG-PPVSSSS 197
            +AP   P P    PS   P+G P +   SG PPV   S
Sbjct: 1061 SAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPS 1098


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 717 IDLYSAIRGDLKKEF*QVLGKIFYIKIVNPTSTLQLTLI 601
           I  YSAI    KK F + + +I Y KI +PT T  ++ +
Sbjct: 452 IKKYSAIAEAKKKGFARKVKRIKYSKISHPTYTESVSFL 490


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,141,407
Number of Sequences: 5004
Number of extensions: 61355
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)