Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021147
(827 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 33 0.28
06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645... 31 0.85
09_02_0177 - 5390594-5390692,5391924-5391998,5392843-5392942,539... 31 1.5
09_02_0607 - 11183382-11183387,11183481-11183637,11184220-111842... 30 2.6
08_01_0827 + 8016704-8017150 30 2.6
09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683 29 3.4
02_03_0246 - 16807619-16808145,16808208-16808868 29 3.4
01_05_0792 - 25275013-25275551,25275715-25275907 29 3.4
08_01_0821 + 7966587-7966832 29 4.5
04_03_0911 + 20767041-20767047,20767119-20769322 29 4.5
07_03_0312 + 16606724-16606796,16606885-16607015,16607105-166072... 29 6.0
04_03_0741 + 19187333-19188868,19189264-19189490,19189578-191898... 29 6.0
12_02_0557 + 20441067-20441397,20441415-20442340 28 7.9
11_01_0722 + 5961348-5961483,5961633-5961901 28 7.9
08_01_0345 + 3055522-3055827,3055968-3056022,3056744-3056919,305... 28 7.9
07_03_1795 + 29603694-29605208,29605423-29605649,29605739-296060... 28 7.9
>02_05_0568 - 30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 33.1 bits (72), Expect = 0.28
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +2
Query: 11 PHAHNPLDRQMQISQVQNMISSGDVNGAFQXXXXXXXXXXVVTACRSAE-PSLVFGPPCQ 187
P PLD ++ + +IS + AF V C + +L P
Sbjct: 1145 PEVEAPLDPMKELGR---LISERKFDEAFTMALQRSDVSIVSWLCSQVDLRALCSMVPVP 1201
Query: 188 LKQHVLLSLVQQLAADMSKDT 250
L Q VLL+L+QQLA D++ DT
Sbjct: 1202 LNQGVLLALLQQLAVDIATDT 1222
>06_02_0064 + 11062798-11063568,11064212-11064261,11064354-11064510,
11064598-11064816,11065301-11065429,11066502-11068031,
11068654-11069013,11069086-11069205,11069727-11069897,
11070022-11070180,11070327-11070452,11070660-11070968
Length = 1366
Score = 31.5 bits (68), Expect = 0.85
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +2
Query: 11 PHAHNPLDRQMQISQVQNMISSGDVNGAFQXXXXXXXXXXVVTACRSAE-PSLVFGPPCQ 187
P PLD + ++ +IS + AF V C + L P
Sbjct: 1221 PEVDAPLD---PVKELSRLISERKFDEAFTMALQRSDVSIVSWLCSQVDLHELCRMNPIP 1277
Query: 188 LKQHVLLSLVQQLAADMSKDT 250
L Q VLL+L QQLA D+ DT
Sbjct: 1278 LNQGVLLALFQQLACDIVNDT 1298
>09_02_0177 -
5390594-5390692,5391924-5391998,5392843-5392942,
5393143-5393244,5393335-5393444,5393896-5393968,
5394976-5395043,5395382-5395475,5396804-5397165
Length = 360
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = +3
Query: 102 WPCPPRTCPSWSQPAGRPSLH--WCSGPPVSSSSTYCYH*FSNW 227
WP PR CP PA + H C PP S +C S+W
Sbjct: 77 WPQLPRACPLAQPPASVVATHRVCCRLPPKIDISYFCGQQTSSW 120
>09_02_0607 -
11183382-11183387,11183481-11183637,11184220-11184284,
11184397-11184469,11184759-11184905,11185515-11185562,
11185637-11185716,11186112-11186439,11186525-11186576,
11187397-11187523,11187613-11187990
Length = 486
Score = 29.9 bits (64), Expect = 2.6
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +1
Query: 172 RAPLSAQAARTAIISSATGRRYVQGHAAKHRYLEEAVMNLDTSSPVTREHLPGVVAE--L 345
R PL A A A+ +A RR G + KH+ EEA + S+ + RE L E
Sbjct: 21 RLPLGADA--DAVADAAKRRR--SGASKKHQAEEEASIPSSLSAKILREALTQQQEESLA 76
Query: 346 QQQVSAFVTASPS 384
Q+ +A TA+PS
Sbjct: 77 DQRPAAAATAAPS 89
>08_01_0827 + 8016704-8017150
Length = 148
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +3
Query: 90 APSSWPCPPRTCPSWSQPAGRPSLHWCSG 176
APS WPC P T P GR S W +G
Sbjct: 57 APSPWPCAPTT-----PPCGRASTAWKNG 80
>09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683
Length = 625
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Frame = -1
Query: 464 QHAVHTVALSRASEASSNMRSLRASGCEGEAVTKADTCCCSSATTPGRCSRVTGLDVS-- 291
+H VH L A A + S + G A C SA P R G+DV
Sbjct: 182 RHKVHPAFLHSAPSADRFLASAGRATMAGTAELLKAPSTCGSAFRPATIGRDHGIDVGAL 241
Query: 290 RFITASSRYLCLAA 249
+F+ +S L AA
Sbjct: 242 KFLASSGAPLSAAA 255
>02_03_0246 - 16807619-16808145,16808208-16808868
Length = 395
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 90 APSSWPCPPRTCPSWSQPAGRPSLHWCSGPPVSS 191
A WPC P C + A PS C+ PP ++
Sbjct: 108 AARCWPCRPPCCCGRRRRAASPSASPCTTPPATA 141
>01_05_0792 - 25275013-25275551,25275715-25275907
Length = 243
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = -2
Query: 151 RPAGCDHEGQVRGGQG-QLEG 92
R +GCD EG+VRG G ++EG
Sbjct: 93 RSSGCDEEGEVRGSNGSRMEG 113
>08_01_0821 + 7966587-7966832
Length = 81
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 344 SSATTPGRCSRVTGLDVSRFITASSRYLCLAAC 246
+S PG C R G V+ + +S R LCL C
Sbjct: 23 ASRKAPGACPRCGGAVVATDVESSRRILCLPLC 55
>04_03_0911 + 20767041-20767047,20767119-20769322
Length = 736
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -3
Query: 162 EGSADLQAVTTRDRSEADKASWKAPFTSPDEIMF--CT 55
EGS D Q + T +S+ D ++ PFT ++I F CT
Sbjct: 221 EGSRDWQTIFTAPKSQCDVYAFCGPFTVCNDITFPSCT 258
>07_03_0312 +
16606724-16606796,16606885-16607015,16607105-16607274,
16607365-16607511,16608248-16608299,16608725-16608899,
16609523-16609605,16610528-16610740,16611850-16611981,
16612517-16612652,16613218-16613273,16613868-16613910,
16613990-16614435
Length = 618
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = -2
Query: 688 PQEGVLAG-PRENLLYKNCKSN*HITTYANFSKLSTSFKHLTITNVQHSPHLGNPTSRVH 512
P GV A PR+ + CK++ + ++ LS + L T + N ++
Sbjct: 124 PSAGVWATFPRQEEAIRFCKAHAYTNVFSYQDHLSGQRRFLVSTYDEFWKRYNNMDPQIR 183
Query: 511 THYNCITESSCC*WKNSMRFTP 446
HY I + S C + F P
Sbjct: 184 HHYEVIQDGSPCHIYFDLEFDP 205
>04_03_0741 + 19187333-19188868,19189264-19189490,19189578-19189899,
19190311-19190399,19190882-19191128,19191756-19191884,
19191967-19192182,19192256-19192379,19192857-19193095
Length = 1042
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -2
Query: 724 MMNRPLQRNKRRPQEGVLAGPRENLLYKNCKSN----*HITTYANFSKLSTSFKHL 569
++ R + R+ R+P ++ P+ L +K+CKSN + + F K T FK L
Sbjct: 846 VLRRQIHRDFRKPL--IVMSPKNLLRHKDCKSNLSEFDDLAGHPGFDKQGTRFKRL 899
>12_02_0557 + 20441067-20441397,20441415-20442340
Length = 418
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 473 MEEQHAVHTVALSRASEASSNMRSLRASGCEGEAVTKA 360
+EE V+ L R ++ +R LR SGC G A +A
Sbjct: 296 LEELRLVNLPDLRRLDVDAAGLRQLRLSGCSGSAEMEA 333
>11_01_0722 + 5961348-5961483,5961633-5961901
Length = 134
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 436 AEHQRPAATCAVCEP 392
A+HQ+PAAT A C+P
Sbjct: 28 ADHQQPAATAAPCDP 42
>08_01_0345 +
3055522-3055827,3055968-3056022,3056744-3056919,
3057104-3057232,3057313-3057572,3057688-3058001,
3058268-3058491,3058862-3059214,3059489-3059916,
3060031-3061514
Length = 1242
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1
Query: 452 HTVALSRASEASSNMRSLRASGCEGEAVTKAD 357
H +S SEA SN+R++ + G E E + KAD
Sbjct: 844 HRKLISLTSEAVSNIRTVASFGQEEEILKKAD 875
>07_03_1795 +
29603694-29605208,29605423-29605649,29605739-29606071,
29606229-29606475,29606948-29607076,29607161-29607376,
29607454-29607577,29608377-29608612
Length = 1008
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = -2
Query: 724 MMNRPLQRNKRRPQEGVLAGPRENLLYKNCKSN----*HITTYANFSKLSTSFKHL 569
++ R + R R+P ++ P+ L +K+CKSN + + F K T FK L
Sbjct: 813 VLRRQIHREFRKPL--IVMAPKNLLRHKDCKSNLSEFDDVEGHPGFDKQGTRFKRL 866
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,501,792
Number of Sequences: 37544
Number of extensions: 453682
Number of successful extensions: 1387
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1387
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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