Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021147
(827 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.023
SB_17097| Best HMM Match : F-box (HMM E-Value=3.8) 31 1.1
SB_15167| Best HMM Match : F-box (HMM E-Value=3.8) 31 1.1
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_34694| Best HMM Match : IncA (HMM E-Value=0.33) 29 3.5
SB_15241| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_2878| Best HMM Match : rve (HMM E-Value=0.094) 29 4.6
SB_40417| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3003
Score = 36.7 bits (81), Expect = 0.023
Identities = 25/78 (32%), Positives = 36/78 (46%)
Frame = +1
Query: 91 RLPAGLVRLGPVPRGHSLQVGRAFTGVRAPLSAQAARTAIISSATGRRYVQGHAAKHRYL 270
R P L+ + G + G + GV A A A +T SS+T + +Q A HRY
Sbjct: 1956 RQPLDLLLTRIMEHGDAESEGSSVAGVPAATYASAVQTGTTSSSTVNKSIQ--ALAHRYC 2013
Query: 271 EEAVMNLDTSSPVTREHL 324
E N D S +T++ L
Sbjct: 2014 VECKTNFDDLSKITQKVL 2031
>SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)
Length = 408
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +1
Query: 628 WIYNFYIKDFPEDLLKLLLEVSSYCAVKVYSSFLRLILWWTPNHSKQYSRKLFYFHVNV* 807
W+Y ++ L K L SYC Y S+L ++L+W K Y L Y+
Sbjct: 76 WLYKSFLNVLSYWLFKSYLNALSYCP---YKSYLNVLLYWP---YKSYLNVLLYWLYKSY 129
Query: 808 IN-LNLW 825
+N L+ W
Sbjct: 130 LNVLSYW 136
>SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)
Length = 392
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +1
Query: 628 WIYNFYIKDFPEDLLKLLLEVSSYCAVKVYSSFLRLILWWTPNHSKQYSRKLFYFHVNV* 807
W+Y ++ L K L SYC Y S+L ++L+W K Y L Y+
Sbjct: 60 WLYKSFLNVLSYWLFKSYLNALSYCP---YKSYLNVLLYWP---YKSYLNVLLYWLYKSY 113
Query: 808 IN-LNLW 825
+N L+ W
Sbjct: 114 LNVLSYW 120
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 90 APSSWPCPPRTCPSWSQPAGRPSLHWCSGPPVSSSST 200
AP + P T PSWSQP PS++ P + T
Sbjct: 921 APPTLPPTTLTTPSWSQPVPVPSMYQPQPPGIMQPPT 957
>SB_34694| Best HMM Match : IncA (HMM E-Value=0.33)
Length = 404
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 311 VTGLDVSRFITASSRYLCLAACPWTYRRPVAELMI 207
V G D+ + ASS +CL CP T+ P A I
Sbjct: 179 VYGPDIPVCVAASSSDVCLPTCPQTHTTPTAPASI 213
>SB_15241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 696 LLRCKGLFIIFKTYFMVDSKSFKTIFEKTVLFSCK 800
++ C+G+FI+F Y+ ++ F +F T K
Sbjct: 34 VMACEGIFILFIIYYTIEEGGFYRVFSATTKIPLK 68
>SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1027
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 311 VTGLDVSRFITASSRYLCLAACPWTYRRPVAELMI 207
V G D+ + ASS +CL CP T+ P A I
Sbjct: 179 VYGPDIPVCVAASSSDVCLPTCPQTHTTPTAPASI 213
>SB_2878| Best HMM Match : rve (HMM E-Value=0.094)
Length = 291
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 111 PPRTCPSWSQ-PAGRPSLHWCSGPPV 185
PPR CPS Q P G ++H+C P+
Sbjct: 102 PPRHCPSRRQPPVGDIAIHYCRHRPI 127
>SB_40417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 681
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 598 SKLSTSFKHLTITNVQHSPHLGNPTSRVHTHYNCITESSCC*WKNSM 458
S+ S + KH+ I N H G PT + +++ +S C +K M
Sbjct: 560 SEGSANLKHIIINNGCHDSVGGQPTDAANENFSFTAIASACGYKTVM 606
>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2499
Score = 28.3 bits (60), Expect = 8.0
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = -1
Query: 467 EQHAVHTVALSRASEASSNMRSLRASGCEGEAVTKADT---CCCSSATTPGRCSR 312
+Q+AVH R ++ + S+ ASGC G +T D C CS T R +R
Sbjct: 349 QQNAVHIYNRWRLQKSFYSPESVGASGCAG--ITCQDVIPWCACSGNDTAERLNR 401
>SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2141
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = -2
Query: 598 SKLSTSFKHLTITNVQHSPHLGNPTSRVHTHY 503
SKLST+ KHLTI H+PH + S+ HY
Sbjct: 15 SKLSTN-KHLTIVTWTHTPHFCDLDSQT-PHY 44
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,601,865
Number of Sequences: 59808
Number of extensions: 514100
Number of successful extensions: 1327
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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