Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021147
         (827 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z83123-5|CAB05611.1|  332|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U80445-6|AAB37797.2|  575|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF016432-7|AAB65382.1|  342|Caenorhabditis elegans Seven tm rece...    28   7.1  
Z81463-9|CAE11302.1|  348|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical protein
            W05B2.2 protein.
          Length = 1278

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -1

Query: 428  SEASSNMRSLRASGCEGEAVTKADTCCCSSAT-TPGRCSRVTGLDVSRFITASSRYLCLA 252
            SEA SNM S       GE   +AD  C + AT    RC+   G       T   R +C +
Sbjct: 1212 SEAESNMGSCLPKLFAGETGCEADEQCGAPATCMEQRCACPKG-------TVQFRRMCAS 1264

Query: 251  ACPWTYR 231
             CP  Y+
Sbjct: 1265 VCPLFYK 1271


>U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical
           protein C10H11.8 protein.
          Length = 382

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 699 LRCKGLFIIFKTYFMVDSKSFKT 767
           L+ + +FI FK YFM   KSF+T
Sbjct: 6   LKNRQIFIFFKKYFMTPEKSFET 28


>Z83123-5|CAB05611.1|  332|Caenorhabditis elegans Hypothetical
           protein T04A11.8 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = +1

Query: 625 SWIYNFYIKDFPEDLLKLLLEVSSY---CAV--KVYSSFLRLILWWTPNHSKQYSRKL 783
           SW YN      P  LL LL    +Y   C +   V  S +RL++ + PN  ++ +RK+
Sbjct: 100 SWCYN----QPPSHLLNLLFNTQAYFNYCVMLYPVLFSTVRLVITYFPNRHEEINRKI 153


>U80445-6|AAB37797.2|  575|Caenorhabditis elegans Hypothetical
           protein C50F2.1 protein.
          Length = 575

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +1

Query: 643 YIKDFPEDLLKLLLEVSSYCAVKVYSSFLRLILWWTPNHS--KQYSRKLFY 789
           Y+K     ++K L+E+S++ ++K+ +S +   L WT   S  KQ++   FY
Sbjct: 269 YVKATEYIIVKCLIELSNFFSLKLITSLIYSKLCWTAMESLTKQHTFLGFY 319


>AF016432-7|AAB65382.1|  342|Caenorhabditis elegans Seven tm
           receptor protein 226 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 667 LLKLLLEVSSYCAVKVYSSFLRLILWWTPNHSKQYSRKLFYFHV 798
           LLKL+ +VS+  ++ + +  + LIL  +P H   Y   + Y  V
Sbjct: 9   LLKLIQDVSAVFSIVINTFLIALILTKSPKHLGAYKWLMIYISV 52


>Z81463-9|CAE11302.1|  348|Caenorhabditis elegans Hypothetical
           protein C06B8.10 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +1

Query: 634 YNFYIKDFPEDLLKLLLEVSSYCAVKVYSSFLRLILWWTPNHSKQYSRKLFYFH 795
           Y F   D P D     L   +  A+ +Y     +I++ TP   K   R L  FH
Sbjct: 15  YEFTYLDSP-DFYTFALHAVALIAIPIYILVGYMIIYKTPQSMKTVKRSLLIFH 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,979,101
Number of Sequences: 27780
Number of extensions: 378813
Number of successful extensions: 1122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)