Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021147
         (827 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.0  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   6.0  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   8.0  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -2

Query: 718 NRPLQRNKRRPQEGVLAGPRENLLYKNCKSN 626
           N   Q+ +  P  G   GP E +   NC  N
Sbjct: 403 NPVTQKREGGPPTGATTGPNEIVTCTNCGPN 433


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -2

Query: 718 NRPLQRNKRRPQEGVLAGPRENLLYKNCKSN 626
           N   Q+ +  P  G   GP E +   NC  N
Sbjct: 423 NPVTQKREGGPPTGATTGPNEIVTCTNCGPN 453


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -2

Query: 718 NRPLQRNKRRPQEGVLAGPRENLLYKNCKSN 626
           N   Q+ +  P  G   GP E +   NC  N
Sbjct: 372 NPVTQKREGGPPTGATTGPNEIVTCTNCGPN 402


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 754 NHSKQYSRKLFYFHVNV 804
           N+ K Y++KL+Y  +N+
Sbjct: 327 NNYKNYNKKLYYNIINI 343


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +1

Query: 757 HSKQYSRKLFYFHVNV 804
           H+  Y++KL+Y  +N+
Sbjct: 324 HNNNYNKKLYYNIINI 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,456
Number of Sequences: 438
Number of extensions: 4438
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)