Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021147
         (827 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13300.2 68416.m01675 transducin family protein / WD-40 repea...    36   0.043
At3g13300.1 68416.m01674 transducin family protein / WD-40 repea...    36   0.043
At3g13290.1 68416.m01673 transducin family protein / WD-40 repea...    34   0.10 
At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 compone...    30   1.6  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    29   2.8  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    29   3.8  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    28   6.6  
At1g70990.1 68414.m08190 proline-rich family protein                   28   6.6  
At4g31570.1 68417.m04483 expressed protein                             28   8.7  

>At3g13300.2 68416.m01675 transducin family protein / WD-40 repeat
            family protein contains 2 WD-40 repeats (PF00400);
            autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
            and autoantigen locus HSU17474 (GI:596134) [Homo sapiens]
          Length = 1309

 Score = 35.5 bits (78), Expect = 0.043
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = +2

Query: 179  PCQLKQHVLLSLVQQLAADMSKDT 250
            P  L Q VLLSL+QQLA D+SKDT
Sbjct: 1221 PLPLSQGVLLSLLQQLACDISKDT 1244


>At3g13300.1 68416.m01674 transducin family protein / WD-40 repeat
            family protein contains 2 WD-40 repeats (PF00400);
            autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
            and autoantigen locus HSU17474 (GI:596134) [Homo sapiens]
          Length = 1344

 Score = 35.5 bits (78), Expect = 0.043
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = +2

Query: 179  PCQLKQHVLLSLVQQLAADMSKDT 250
            P  L Q VLLSL+QQLA D+SKDT
Sbjct: 1256 PLPLSQGVLLSLLQQLACDISKDT 1279


>At3g13290.1 68416.m01673 transducin family protein / WD-40 repeat
            family protein contains 2 WD-40 repeats (PF00400);
            autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
            and autoantigen locus HSU17474 (GI:596134) [Homo sapiens]
          Length = 1322

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 17/29 (58%), Positives = 19/29 (65%)
 Frame = +2

Query: 179  PCQLKQHVLLSLVQQLAADMSKDTQPSTG 265
            P  L Q VLLSL+QQLA D+S DT    G
Sbjct: 1234 PLPLSQGVLLSLLQQLACDISTDTSRKLG 1262


>At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 component,
            putative / oxoglutarate decarboxylase, putative /
            alpha-ketoglutaric dehydrogenase, putative similar to
            SP|P20967 2-oxoglutarate dehydrogenase E1 component,
            mitochondrial precursor (EC 1.2.4.2) (Alpha-ketoglutarate
            dehydrogenase) {Saccharomyces cerevisiae}; contains Pfam
            profiles PF02779: Transketolase, pyridine binding domain,
            PF00676: Dehydrogenase E1 component
          Length = 1017

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = -2

Query: 724  MMNRPLQRNKRRPQEGVLAGPRENLLYKNCKSN----*HITTYANFSKLSTSFKHLTITN 557
            ++ R + R+ R+P   ++  P+  L +K+CKSN      +  +  F K  T FK L    
Sbjct: 824  VLRRQIHRDFRKPL--IVMAPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQ 881

Query: 556  VQHS 545
              HS
Sbjct: 882  NDHS 885


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 90  APSSWPCPPRTCPSWSQPAGRPSLHWCSGPPVSSSST 200
           +PS  P PP T PS   P   P+     G P SS +T
Sbjct: 451 SPSIVPSPPSTTPSPGSPPTSPTTPTPGGSPPSSPTT 487


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 69  SHRVT*TAPSSWPCPPRTCPSWSQPAGRPSLHWCSGPPVSSS 194
           S R T  APS    PP + P+ + P  +P       PP S+S
Sbjct: 42  SPRATAPAPSPSANPPPSAPTTAPPVSQPPTESPPAPPTSTS 83


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 93  PSSWPCPPRTCPSWSQPAGRPSLHWCSGPP 182
           P   P PP  C  +S P   P +H+ S PP
Sbjct: 614 PCIEPPPPPPCIEYSPPPPPPVVHYSSPPP 643


>At1g70990.1 68414.m08190 proline-rich family protein
          Length = 176

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +3

Query: 93  PSSWPCPPRTCPSWSQPAGRPSLHWCSGPPVSSSSTYCY 209
           P S P P + CP    P   P   +C  PP    STY Y
Sbjct: 98  PPSPPPPSQACPPPPLPPSPPKKSYCPPPP----STYIY 132


>At4g31570.1 68417.m04483 expressed protein
          Length = 2712

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 23/70 (32%), Positives = 31/70 (44%)
 Frame = -1

Query: 482  LLLMEEQHAVHTVALSRASEASSNMRSLRASGCEGEAVTKADTCCCSSATTPGRCSRVTG 303
            L  MEEQ         RA      + SL +    GEAV + D C   S T+       TG
Sbjct: 1050 LSTMEEQLVALQDESERAMMVEHELTSLMSEF--GEAVVRLDDCLLRSGTSGAH----TG 1103

Query: 302  LDVSRFITAS 273
            LD+++ I+ S
Sbjct: 1104 LDMTKRISGS 1113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,830,744
Number of Sequences: 28952
Number of extensions: 341756
Number of successful extensions: 891
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)