Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021146
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    30   0.34 
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    29   0.44 
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    29   0.44 
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    29   0.59 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.0  
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...    27   2.4  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    26   5.5  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   7.2  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 345 VSRDIRTTTEARRPGTARNTRRPKPTELSVSAGS 244
           V+R +RT+T  RRP T    R+PK    SV   S
Sbjct: 21  VARKVRTSTTFRRPKTLELARKPKYARKSVPHAS 54


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -3

Query: 346 REQGHQDHHRGPAPRHSE-KHSASEADRAER-FCRERSETPRHRNKPSRPVWSRRSP 182
           RE  H   HR    RH E KH     DR+ER   RE  +  RH      P+  ++ P
Sbjct: 20  RETNHSRRHRHHHSRHRESKH--GRHDRSERPSSREAGDRSRHERFSKEPLEVKKLP 74


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -1

Query: 345 VSRDIRTTTEARRPGTARNTRRPKPTELSVS 253
           V++ +RT+T  RRP T + +R+PK    SV+
Sbjct: 21  VAKKVRTSTTFRRPKTLQLSRKPKYARKSVA 51


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 319 RGPAPRHSEKHSASEADRAERFCRERSETPRHRNKPSRPVWSRRSPHH 176
           R P+P  +   S    +R++R    RS +PR+R++   P    RSP +
Sbjct: 116 RSPSPHEARSRSPYNDERSDR----RSMSPRYRSRSRSPDGRSRSPDY 159


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = -3

Query: 322  HRGPAPRHSEKHSASEADRAERFCRERSETPRHRNKPSRPVWSRRSPHHFH 170
            H   +P  +    AS A       R +S+  RH    S    S+   HH H
Sbjct: 1260 HSNASPSPTSSSMASAAPARTSVSRSKSKAERHETSTSSRKSSKSGEHHHH 1310


>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 310 APRHSEKHSASEADRAERFCRERSETPRHRNKPSRPVWSRRSP 182
           AP+ +   +++E  R  +    R   P HR  P R VW +  P
Sbjct: 61  APKFAPAKTSAEKKRGAKPQMRRVPIPPHRMTPLRNVWPKLYP 103


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -3

Query: 304 RHSEKHSASEADRAERFCRERSETPRHRNKPSRPVWSRRSPHH 176
           + ++K +   AD        R +  R  N P  P W+ R+ HH
Sbjct: 865 KRNKKAAKLTADSVPFPFESREQYERSLNLPMGPEWTTRASHH 907


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 493 SWRLSALLAKELELDHSRALSKSRLSSW 410
           SW LS ++ KEL++       +  L SW
Sbjct: 694 SWSLSEIVLKELDIKRQDINQEKALQSW 721


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,591
Number of Sequences: 5004
Number of extensions: 38995
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)