Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021146
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 31 0.61
04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071... 31 0.61
04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002 29 3.2
10_01_0076 - 987092-987671,987747-987812,988201-988363,988467-98... 29 4.3
12_02_1275 - 27482784-27483272 28 5.6
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 28 5.6
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295... 28 5.6
02_04_0130 + 20025414-20025531,20026357-20026585,20026909-200270... 28 5.6
04_04_0318 + 24347364-24348826,24348920-24349048,24349158-243492... 28 7.5
02_01_0129 - 934865-935152,935241-935490,935965-936105,937175-93... 28 7.5
09_06_0293 + 22086359-22086496,22086604-22087213,22087407-220879... 27 9.9
08_01_0397 - 3509186-3510291,3510322-3512335 27 9.9
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98... 27 9.9
01_06_0997 + 33676441-33676758,33678223-33678314,33678443-336785... 27 9.9
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 31.5 bits (68), Expect = 0.61
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Frame = -3
Query: 349 SREQGHQDHHRGPAPR----HSEKHSASEADRAERFCRERSETPRHRNKPSRPVWS 194
SR G R P+P S +H + DR R RS PR R P R +WS
Sbjct: 305 SRRPGSPIRRRSPSPPPRRLRSPRHLSPRRDRGSPI-RRRSPLPRRRLTPPRRMWS 359
>04_03_0665 -
18506221-18506271,18506331-18506401,18507097-18507169,
18507476-18507805
Length = 174
Score = 31.5 bits (68), Expect = 0.61
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 171 WKWCGLRRDQTGREG 215
W WCGLRR + GR G
Sbjct: 65 WMWCGLRRSKAGRRG 79
>04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002
Length = 877
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = -3
Query: 331 QDHHRGPAPRHSEKHSASEADRAERFCRERSETPRHR 221
+DHHR PR + SASEA ER SE P HR
Sbjct: 714 EDHHRSKRPRTTTTSSASEA-YLERLYDAVSENP-HR 748
>10_01_0076 -
987092-987671,987747-987812,988201-988363,988467-988548,
989153-989202,989237-989270,990177-990239,990339-990403,
990485-990560,991274-991353,991514-991628,991729-991830
Length = 491
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = -3
Query: 355 VQSREQGHQDHHRGPAPRHSEKHSASEADRAERFCRERSETPRHRNKP---SRPVWSRRS 185
+ +R+Q H R PR E+ + + +++ RER R R + +R S+
Sbjct: 274 LSTRDQQHAGRPRSEEPRRDERRADRDREKSRERPRERDRDERTRERSHDRTRERDSKED 333
Query: 184 PHH 176
HH
Sbjct: 334 RHH 336
>12_02_1275 - 27482784-27483272
Length = 162
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 168 QWKWCGLRRDQTGREG 215
+W W GLRR +TGR G
Sbjct: 144 RWVWRGLRRTKTGRRG 159
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = -3
Query: 322 HRGPAPRHSEKHSASEADRAERFCRERSET----PRHRNKPSRPVWSRRS 185
+R P+PRHS S +E R + R RS P HRN S PV RS
Sbjct: 493 YRRPSPRHSRSRSPAEHQRRDVRNRLRSGRDGGGPDHRNS-SPPVNRGRS 541
>02_05_1044 +
33728623-33728768,33728814-33728993,33729446-33729523,
33729834-33729930,33730206-33730339,33730944-33731025,
33731631-33731717,33731875-33731981,33732674-33732845,
33733018-33733259,33733482-33733563,33733954-33734019,
33734040-33734159,33734935-33735012,33735083-33735178,
33735791-33735897,33736031-33736199,33736402-33736452,
33736567-33736650,33736946-33737040,33737175-33737265,
33737342-33737488,33737614-33737676
Length = 857
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 501 LGHHGDSRRCWPKSWSLTIAGHLASRD 421
L D + WP W ++ AGH+++ D
Sbjct: 76 LQRRADCKDTWPGQWDISSAGHISAGD 102
>02_04_0130 +
20025414-20025531,20026357-20026585,20026909-20027032,
20027441-20027497,20027613-20027804,20027882-20027959,
20028437-20028619,20028715-20028795,20029196-20029228,
20029448-20029513,20029591-20029683,20030106-20030231,
20030395-20030508,20030973-20031068,20031159-20031256,
20031416-20031831,20032025-20032473,20032810-20032905
Length = 882
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 310 APRHSEKHSASEADRAERFCRERSETPRHRNKP 212
APRHS + S + +++ C E +E N P
Sbjct: 673 APRHSSRSSGRSLEESDKSCPENTEGEAKENLP 705
>04_04_0318 +
24347364-24348826,24348920-24349048,24349158-24349293,
24349447-24349535,24349631-24349742,24349836-24349942,
24350033-24350129
Length = 710
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 367 TLRAVQ-SREQGHQDHHRGPAPRHSEKHSASEADRAERFCRERSETP 230
T+R + SR G D AP H +K SAS AD AE R+++ +P
Sbjct: 226 TMRNISTSRWAGANDDEEEGAP-HRKKKSASPADSAELGQRKKALSP 271
Score = 27.5 bits (58), Expect = 9.9
Identities = 22/58 (37%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Frame = -3
Query: 364 LRAVQSREQGHQDHHRGPAPRHSEKHS--ASEADR-----AERFCRERSETPRHRNKP 212
L A SR Q HH P+ RH S EADR R RE S HR P
Sbjct: 19 LDAEASRRSKEQQHHHHPSGRHQRGDSDPRCEADRRRDGGRSRGGRELSNGYGHRRSP 76
>02_01_0129 -
934865-935152,935241-935490,935965-936105,937175-937707
Length = 403
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 253 RNAQLC-RLRTPSVSRCAWAPGLCGG 327
RNA C R P V+ +WAP CGG
Sbjct: 74 RNAWNCPRNSRPPVAALSWAPARCGG 99
>09_06_0293 +
22086359-22086496,22086604-22087213,22087407-22087938,
22088617-22089151
Length = 604
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 168 QWKWCGLRRDQTGREG 215
+W W GLRR +TGR G
Sbjct: 558 RWVWRGLRRIKTGRRG 573
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -3
Query: 352 QSREQGHQDHHRG-PAPRHSEKHSASEADRAERFCRERSETPRHRNK 215
+ RE+ HHR R S +H E DR + R+R RHR K
Sbjct: 19 KDRERSSSRHHRDRDRERSSSRHHHRE-DRDDDRDRDRDRERRHREK 64
>05_01_0148 -
985745-986180,986290-986385,986498-986694,986824-986919,
987020-987059,987751-987857
Length = 323
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -3
Query: 343 EQGHQDHHRGPAPRHSEKHSASEADRAERFCRERSETPRHRNKPSRPVWSRRSP 182
E+ DH P R + + S S+ R+ RS +PR+ PS RSP
Sbjct: 247 ERNGSDHGDSPRGRENSR-SPSDGYRSPAAANGRSPSPRNNGSPSPMDNGSRSP 299
>01_06_0997 +
33676441-33676758,33678223-33678314,33678443-33678540,
33678824-33678979,33679106-33679731,33679826-33679896,
33679987-33680241,33680337-33680454,33680595-33680766,
33680854-33681395
Length = 815
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 168 QWKWCGLRRDQTGREG 215
+W+W GLRR + GR G
Sbjct: 64 RWEWHGLRRTKAGRRG 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,578,680
Number of Sequences: 37544
Number of extensions: 310367
Number of successful extensions: 1055
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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