Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021146
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z48245-2|CAA88291.1| 309|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z37139-10|CAA85495.1| 309|Caenorhabditis elegans Hypothetical p... 29 3.8
U95074-2|AAB94648.1| 309|Caenorhabditis elegans cyclophilin iso... 29 3.8
U36581-1|AAC47131.1| 309|Caenorhabditis elegans cyclophilin iso... 29 3.8
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 29 3.8
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 29 3.8
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 29 3.8
AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain pro... 29 3.8
AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain pro... 29 3.8
AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical ... 29 3.8
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 27 8.8
AC024747-3|AAK85498.2| 318|Caenorhabditis elegans Hypothetical ... 27 8.8
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical
protein F54F3.1 protein.
Length = 1584
Score = 31.5 bits (68), Expect = 0.54
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 358 AVQSREQGHQDHHRGPAPRHSEKHSASEADRAERFCRERSETPRHRN 218
A Q++EQ HQ HH+ P+ + S E + C +R + H N
Sbjct: 326 ARQAQEQHHQQHHQPDQPQQQPQRS-QEGSLPKMSCSQRDDKSCHAN 371
>Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical
protein T09E8.1d protein.
Length = 547
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -3
Query: 352 QSREQGHQDHHRGPAPRH-SEKHSASEADRAERFCRERSETPRHRNKPSRP 203
Q+ H HH PAPRH S H E R +S +P N+ RP
Sbjct: 31 QNGNSHHHHHHLPPAPRHLSSSHHQIETISGSSKLRAQSGSPA-LNRKKRP 80
>Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical
protein C09G5.4 protein.
Length = 323
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -3
Query: 313 PAPRHSEKHSASEADRAERFCRERSETPRHRNKPSRPVWSRR 188
P P S SA E AE+ R R+ RHRN R V +R
Sbjct: 270 PCPSRSGSSSAVETGAAEQGYRHRAVAARHRNVIRRRVAKKR 311
>Z48245-2|CAA88291.1| 309|Caenorhabditis elegans Hypothetical
protein T27D1.1 protein.
Length = 309
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -3
Query: 307 PRHSEKHSASEADRAERFCRERSETPRH--RNKPSRPVWSRRSPHH 176
PR E RF RERS TP H RN P++ W S H
Sbjct: 260 PRRDENGITVRGRGGVRFRRERSATPEHWRRNAPTK--WVHDSHKH 303
>Z37139-10|CAA85495.1| 309|Caenorhabditis elegans Hypothetical
protein T27D1.1 protein.
Length = 309
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -3
Query: 307 PRHSEKHSASEADRAERFCRERSETPRH--RNKPSRPVWSRRSPHH 176
PR E RF RERS TP H RN P++ W S H
Sbjct: 260 PRRDENGITVRGRGGVRFRRERSATPEHWRRNAPTK--WVHDSHKH 303
>U95074-2|AAB94648.1| 309|Caenorhabditis elegans cyclophilin
isoform 9 protein.
Length = 309
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -3
Query: 307 PRHSEKHSASEADRAERFCRERSETPRH--RNKPSRPVWSRRSPHH 176
PR E RF RERS TP H RN P++ W S H
Sbjct: 260 PRRDENGITVRGRGGVRFRRERSATPEHWRRNAPTK--WVHDSHKH 303
>U36581-1|AAC47131.1| 309|Caenorhabditis elegans cyclophilin
isoform 9 protein.
Length = 309
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -3
Query: 307 PRHSEKHSASEADRAERFCRERSETPRH--RNKPSRPVWSRRSPHH 176
PR E RF RERS TP H RN P++ W S H
Sbjct: 260 PRRDENGITVRGRGGVRFRRERSATPEHWRRNAPTK--WVHDSHKH 303
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 307 PRHSEKHSASEADRAERFCRERSETPRHRNKPSRP-VWSRRS 185
PR +++H + R R R RS TP R SR SRRS
Sbjct: 76 PRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRS 117
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 307 PRHSEKHSASEADRAERFCRERSETPRHRNKPSRP-VWSRRS 185
PR +++H + R R R RS TP R SR SRRS
Sbjct: 76 PRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRS 117
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 307 PRHSEKHSASEADRAERFCRERSETPRHRNKPSRP-VWSRRS 185
PR +++H + R R R RS TP R SR SRRS
Sbjct: 76 PRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRS 117
>AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform b
protein.
Length = 792
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 348 AVSRDIRTTTEARRPGTARNTRRPKPTELSVSAGSA 241
+ S + T++ ARRP TA+ PT + +A +A
Sbjct: 172 STSNGVATSSSARRPATAKRDTLAAPTSTAAAAAAA 207
>AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform a
protein.
Length = 794
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 348 AVSRDIRTTTEARRPGTARNTRRPKPTELSVSAGSA 241
+ S + T++ ARRP TA+ PT + +A +A
Sbjct: 172 STSNGVATSSSARRPATAKRDTLAAPTSTAAAAAAA 207
>AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical
protein Y119D3B.12a protein.
Length = 339
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -3
Query: 334 HQDHHRGPAPRHSEKHSASEADRAERFCRERSETPRH 224
H++H R ++H + ++R+ER R E RH
Sbjct: 303 HREHREHKEHRRDDRHRSERSERSERSERSDRERKRH 339
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = -3
Query: 346 REQGHQDHHRGPAPRHSEKHSAS-EADRAERF-CRERSETPRHRNKPSRPVWSRRSP 182
R + + PAPR S S +A R R +S +PR R P+ R+SP
Sbjct: 438 RRRRSPSQSKSPAPRRRRSPSKSPQAPRRRRSPSGSKSRSPRRRRSPAAAPRRRQSP 494
>AC024747-3|AAK85498.2| 318|Caenorhabditis elegans Hypothetical
protein Y110A2AM.1 protein.
Length = 318
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 364 LRAVQSR-EQGHQDHHRGPAPRHSEKHSASEADRAERFCRERSETPRHR 221
LRA + R Q + H R R + +A+ ADR ERF +E E R
Sbjct: 127 LRARRERIVQEARAHARRADARDARLEAAAAADRRERFLQEAQEADARR 175
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,420,226
Number of Sequences: 27780
Number of extensions: 250471
Number of successful extensions: 861
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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