Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021146
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit...    31   0.67 
At3g08670.1 68416.m01007 expressed protein                             30   1.2  
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar...    30   1.5  
At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein...    29   2.7  
At1g65670.1 68414.m07452 cytochrome P450 family protein similar ...    29   3.6  
At1g79690.1 68414.m09294 MutT/nudix family protein contains Pfam...    28   6.2  
At5g59120.1 68418.m07409 subtilase family protein contains simil...    27   8.2  
At2g44190.1 68415.m05497 expressed protein  contains Pfam profil...    27   8.2  

>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
          Length = 589

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
 Frame = -3

Query: 352 QSREQGHQDHHRGPAPRHSEK-------HSASEADRAERFCRERSETPRHRNKP---SRP 203
           + R++ H+D HR  +   SEK       H     DR  R  R+R    RHR +    SR 
Sbjct: 98  RQRDRHHRDRHRDRSRERSEKRDDLDDDHHRRSRDRDRRRSRDRDREVRHRRRSRSRSRS 157

Query: 202 VWSRRS-PHHFHCS 164
              RRS   H H S
Sbjct: 158 RSERRSRSEHRHKS 171


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 337 GHQDHHRGPAPRHSEKHSASEADRAERFCRERSETPRHRNKPSR 206
           G+  H    AP+ +    AS A +A R    +SE+  H ++P+R
Sbjct: 110 GNDSHSSLAAPKIASSARASSASKASRLSVSQSESGYHSSRPAR 153


>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
           RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 1166

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = -3

Query: 361 RAVQSREQGHQDHHRG---PAPRHSEKHSASEADRAERFCRERSETPRHRNKPSR 206
           R V  +E+GH++H R       R  E+    + +R     RER E  R   +  R
Sbjct: 114 RRVNEKERGHREHERDRGKDRKRDREREERKDKEREREKDRERREREREEREKER 168


>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 275

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/83 (24%), Positives = 32/83 (38%)
 Frame = -3

Query: 463 ELELDHSRALSKSRLSSWXXXXXXXXXXXXXVTLRAVQSREQGHQDHHRGPAPRHSEKHS 284
           E + D S   S S  SS                 +  Q + +  +  +   +   SE  S
Sbjct: 191 ETDSDGSSGESSSEYSSSSDSEDERRRRRKAKKSKKKQKQRKERRRRYSSSSSESSESES 250

Query: 283 ASEADRAERFCRERSETPRHRNK 215
           AS++D  E   R + ++ RH NK
Sbjct: 251 ASDSDSDEDRSRRKKKSKRHSNK 273


>At1g65670.1 68414.m07452 cytochrome P450 family protein similar to
           Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana]
          Length = 482

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 293 LAVPGRRASVVVLMSLLTALHRPEGDRRGC 382
           L   G + SV+  + LLT  H  EG RRGC
Sbjct: 137 LGSQGLKLSVMQDIDLLTRTHMEEGARRGC 166


>At1g79690.1 68414.m09294 MutT/nudix family protein contains Pfam
           NUDIX domain [PF00293]; very low similarity to Chain A
           and Chain B of Escherichia coli isopentenyl
           diphosphate:dimethylallyl diphosphate isomerase
           [gi:15826361] [gi:15826360]
          Length = 772

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 486 DSRRCWPKSWSLTIAGHLASRD 421
           D +  WP  W ++ AGH+++ D
Sbjct: 54  DDKDSWPGQWDISSAGHISAGD 75


>At5g59120.1 68418.m07409 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo]; non-consensus AA acceptor site at exon 6
          Length = 732

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +1

Query: 172 GNGVDSVETKQVEK--VYSGDGASLSAPGRNAQLCRLRTPSVSRCAWAPGLCGGP 330
           G  V++ E K  +   VY    AS +    +A LC L     SR      +CGGP
Sbjct: 340 GKSVNAYEMKGKDYPLVYGKSAASSACDAESAGLCELSCVDKSRVKGKILVCGGP 394


>At2g44190.1 68415.m05497 expressed protein  contains Pfam profile:
           PF04484 family of unknown function (DUF566)
          Length = 474

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 310 APRHSEKHSASEADRAERFCRERSETPRHRNKPSRPVWSRRSP 182
           +PRH  +H    +  A+R  R+        N+PS    S  SP
Sbjct: 66  SPRHHHQHQNQRSTSAQRMRRQLKMQEGDENRPSETARSLDSP 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,782,603
Number of Sequences: 28952
Number of extensions: 228006
Number of successful extensions: 754
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)