Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021145
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    30   0.32 
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    27   3.0  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    27   3.0  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   3.9  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    27   3.9  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   6.8  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    26   6.8  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    25   9.0  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   9.0  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   9.0  

>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -3

Query: 456 LLLEYVCCRNSWACCQRTGP---SPPDSSALMMTFRNFRANFVGL 331
           L+   VC  NSWA   R+ P     PD S  + T +NF   + GL
Sbjct: 319 LIWSAVCSSNSWAAIYRSSPLLAKLPDGSTEVCTPKNFIWPYAGL 363


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 337 WFIAQRDRGRVFIVELHRPVDAAALVQRVRTFIDKLAHVSSSLAANAHEIEP 182
           W +   D G + + E        +L+QR RTF+ + +  +S    NAH + P
Sbjct: 272 WSLVSNDGGLLVLCE-RGTKRGFSLIQRARTFLLQKSKNTSDKQFNAHIVAP 322


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 337 WFIAQRDRGRVFIVELHRPVDAAALVQRVRTFIDKLAHVSSSLAANAHEIEP 182
           W +   D G + + E        +L+QR RTF+ + +  +S    NAH + P
Sbjct: 272 WSLVSNDGGLLVLCE-RGTKRGFSLIQRARTFLLQKSKNTSDKQFNAHIVAP 322


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/80 (21%), Positives = 32/80 (40%)
 Frame = -2

Query: 313 GRVFIVELHRPVDAAALVQRVRTFIDKLAHVSSSLAANAHEIEPKSSPSSLAM*DCSQSG 134
           G V IVE         +      F   LA  S +++     + PK++P+++     + + 
Sbjct: 115 GTVEIVEPTAGTVTETITSGTLPFTTTLAQASGTVSGTVEIVSPKNNPTTVYSGTVATTE 174

Query: 133 STFLKTLVACSAAACQPXKG 74
           +    T+V    A C   +G
Sbjct: 175 TFSSSTVVVIPTAICDGVRG 194


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/80 (21%), Positives = 32/80 (40%)
 Frame = -2

Query: 313 GRVFIVELHRPVDAAALVQRVRTFIDKLAHVSSSLAANAHEIEPKSSPSSLAM*DCSQSG 134
           G V IVE         +      F   LA  S +++     + PK++P+++     + + 
Sbjct: 115 GTVEIVEPTAGTVTETITSGTLPFTTTLAQASGTVSGTVEIVSPKNNPTTVYSGTVATTE 174

Query: 133 STFLKTLVACSAAACQPXKG 74
           +    T+V    A C   +G
Sbjct: 175 TFSSSTVVVIPTAICDGVRG 194


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = -2

Query: 313  GRVFIVELHRPVDAAALVQRVRTFIDKLAHVSSSLAANAHEIEPKSSPSSLAM*DCSQSG 134
            G V +VE         L    + F   +A  S S++ N   IEP  S  +  +   S+S 
Sbjct: 892  GTVEVVEPAAGTVTGTLTSGSQFFTTTIAQASGSVSGNVEVIEPSGSTVTSTIYSGSESF 951

Query: 133  STFL 122
            +T L
Sbjct: 952  TTTL 955


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 459 PLSSQSWSSKSNVASREKRISGIRPRFHYSAGYRIVTQYPAGF 587
           P+S+Q  SS + VAS E  IS ++   + S      T  P  F
Sbjct: 372 PISNQRLSSLNRVASFESNISSLKSALYASQNSDGSTSNPVPF 414


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -2

Query: 319 DRGRVFIVELHRPVDAAALVQRVRTFIDKLAHVSSSLAANAHEIEPKSSPSSLA 158
           D+ +  I +LH P+     ++    ++  LA  +  LAA A E   +  PS  A
Sbjct: 167 DKMKFLIPKLHFPIPVPPAMKNHGNYVMSLAEFTRWLAAKAEEYGVEIYPSFAA 220


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -2

Query: 715 ICIN**NNHF*RAIIKIKILHNLLWYYLSFVKKHDI 608
           IC N  + HF   ++KI  +H+++ Y ++  K+H+I
Sbjct: 296 ICDNAVDRHFGTGVLKITPMHSIVDYEIA--KRHNI 329


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 303 SSSNFTVQSMRPLSYSACGPLSINWRTSAPH 211
           SSS++ V    P S ++ GP+  N+ +++ H
Sbjct: 126 SSSSYAVSPTSPTSPTSSGPIGSNFDSASEH 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,901
Number of Sequences: 5004
Number of extensions: 59780
Number of successful extensions: 193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)