Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021145
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0278 + 27404914-27404947,27405088-27405228,27405747-274057...    31   1.0  
05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,190...    28   7.1  
08_01_0444 - 3934777-3936130,3939744-3940141                           28   9.4  
02_01_0171 - 1179095-1179388,1179668-1179801,1180036-1180900,118...    28   9.4  

>02_05_0278 +
           27404914-27404947,27405088-27405228,27405747-27405772,
           27406036-27406071,27406296-27406976
          Length = 305

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 390 AATAPCAGNTPSCSGNTRTPREAP--LSSQSWSSKSNVASREKRISGIRPR 536
           A   P  G + S +  T TPR AP   S+++ S +S+ A   +R S  RPR
Sbjct: 228 AMGGPRTGGSASDTRTTSTPRSAPRCASARAASRRSSAAPARRRASEPRPR 278


>05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,
            1902740-1902821,1902928-1903054,1903369-1903686,
            1903785-1903846,1903988-1904074,1904139-1904195,
            1906113-1906197,1906916-1907185,1908158-1908254,
            1908390-1908436,1908826-1908939,1909024-1909117,
            1909360-1909457,1910356-1910455,1911445-1911521,
            1911824-1913122
          Length = 1110

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +3

Query: 411  GNTPSCSGNTRTPREAPLSSQSWSSKSNVASREKRISG-IRPRFHYSAGYR 560
            GN  SC G T       + S  +     V  R K I G ++ R H SA +R
Sbjct: 1054 GNFSSCKGGTTVNSSMGMDSNQFFEYVRVVQRVKHIMGRLQVRAHESARHR 1104


>08_01_0444 - 3934777-3936130,3939744-3940141
          Length = 583

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 456 APLSSQSWSSKSNVASREKRISGI 527
           APL  + WSS S+ A  E R+ G+
Sbjct: 350 APLVGKLWSSSSSAADMEARLKGV 373


>02_01_0171 -
           1179095-1179388,1179668-1179801,1180036-1180900,
           1180998-1181258,1181424-1181621,1181752-1181982,
           1185337-1185648,1185750-1186247
          Length = 930

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +3

Query: 375 KPSCLAATAPCAGNTPSCSGNTRTPREAPLSSQSWSSKSNVASREKRISGIRPRFHYSAG 554
           KP+  AAT        S S ++  P  AP S            R+K I G     H++AG
Sbjct: 125 KPAAAAATPAAVAAGDSSSSSSSPPPSAPKSPVEIKIDELTEERKKLIKGSFRDRHFNAG 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,103,859
Number of Sequences: 37544
Number of extensions: 405739
Number of successful extensions: 1306
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)