Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021145
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58037| Best HMM Match : DUF750 (HMM E-Value=1.8)                    48   8e-06
SB_9915| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.34 
SB_11649| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_58782| Best HMM Match : Hormone_5 (HMM E-Value=2.1)                 31   1.4  
SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_31268| Best HMM Match : zf-C2H2 (HMM E-Value=5.04467e-44)           31   1.4  
SB_26484| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_34158| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)                  29   3.1  
SB_29067| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_1354| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.5  
SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_24453| Best HMM Match : Rho_N (HMM E-Value=4.8)                     28   9.5  
SB_23649| Best HMM Match : BESS (HMM E-Value=6.1)                      28   9.5  

>SB_58037| Best HMM Match : DUF750 (HMM E-Value=1.8)
          Length = 281

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
 Frame = +3

Query: 15  MRYYCGADRWRRACDG---AETAPX-SGWHAAALHATNVFRKVEPDWLQSYIAREEGEDF 182
           +RY    D + R  D    + ++P    W +      ++FRKVE DW  +Y+AR EG   
Sbjct: 80  IRYSIAIDNYYRLTDDNLPSHSSPALEDWKSGTNGVESIFRKVEHDWKMAYLARNEGCQT 139

Query: 183 GSISWAFAASE 215
           GS+SW    SE
Sbjct: 140 GSVSWKVDVSE 150



 Score = 36.7 bits (81), Expect = 0.021
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +2

Query: 350 RKFRKVIIKAELSGGDGPVRWQHAQLFRQ 436
           R  + + + A++SGG G   WQHAQLFRQ
Sbjct: 236 RGAKTLTLTAQMSGGQGDNAWQHAQLFRQ 264



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +2

Query: 260 YESGRIDWTVKFDDENPTTVTLSDKPT 340
           +E+G++DW++  DD+    + L  +P+
Sbjct: 167 FENGKVDWSIHGDDKEKQFIKLEGEPS 193


>SB_9915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 480 TTIVTIKELLLEYVCCRNSWACCQRTGPS--PPDSSALMMT 364
           T I+TIK  L     CR +  CC++TG S  PPD++    T
Sbjct: 262 TPILTIKRWLRNEHACRRNNHCCRQTGLSAKPPDATVATQT 302


>SB_11649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 755

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 429 SGNTRTPREAPLSSQSWSSKSNVASREKRISGIRPRFHYSAGYR 560
           S N  T R+  L  +SWS  SN +  EK ++ IRP    +A  R
Sbjct: 455 SRNNSTTRQNNLDVRSWSMSSNKSVPEKEMTEIRPPSAKAAAIR 498


>SB_58782| Best HMM Match : Hormone_5 (HMM E-Value=2.1)
          Length = 215

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -3

Query: 549 PNSENVAGYRISVSLYWQH*IYWTTIVTIKELLLEYVCCRNSWACCQRTG 400
           P+S++    + +  +Y    ++W+  +T+  + L YV  R  W  C R G
Sbjct: 159 PDSDSTTPTQTTELIYNLSVVFWSYKLTVLLICLSYVFFRQKWMHCHRIG 208


>SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1350

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -3

Query: 549 PNSENVAGYRISVSLYWQH*IYWTTIVTIKELLLEYVCCRNSWACCQRTG 400
           P+S++    + +  +Y    ++W+  +T+  + L YV  R  W  C R G
Sbjct: 418 PDSDSTTPTQTTELIYNLSVVFWSYKLTVLLICLSYVFFRQKWMHCHRIG 467


>SB_31268| Best HMM Match : zf-C2H2 (HMM E-Value=5.04467e-44)
          Length = 454

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = +2

Query: 281 WTVKFDDENPTTVTLSDKPTKFARKFRKVIIKAELSGGD----GPVRWQHAQLFRQHTYS 448
           W + F + +    T S K  + A     +I   E SGGD     PV  +    F ++T+S
Sbjct: 27  WVIPFQNSSSQENTFSPKDEETANSTESLIAGQEASGGDDAKASPV-LESQPFFTKYTFS 85

Query: 449 KRSSFIVT 472
             SS +VT
Sbjct: 86  PDSSPLVT 93


>SB_26484| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
 Frame = +3

Query: 411 GNTPSCSGNTRTPREAPLSSQSWSSKSNVASRE----KRISGIRPRFHYSAGYRIVT 569
           GN    +G    P EAP++ +  ++ S+ A+RE    +R++GI+ R    A + + T
Sbjct: 261 GNFSDANGGAYLPFEAPMALEKSTTCSHAATRERKSGRRVTGIQARSVSGAAFSLPT 317


>SB_34158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 84  GWHAAALHATNVFRKVEPDWLQSYIAREEGEDFGSISWAFAASE-ELTCASLSIKV 248
           GW        +V R V+    Q Y  R  G   GSISW F  S+  L    +++KV
Sbjct: 67  GWERGVFSFDSVNRIVDEKSEQVYFDRTPGSATGSISWKFDFSKCGLLVDEVTVKV 122


>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
          Length = 841

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 414 NTPSCSGNTRTPREAPLSSQ-SWSSKSNVASREKRISGIRPRFHYSAGYR 560
           +T  C   + T REA +S + +W+++ N        S   PRF  SA  R
Sbjct: 375 HTSFCPAESETYREASVSCRGNWTNRKNDMRYSAETSSSHPRFENSANAR 424


>SB_29067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +3

Query: 30  GADRWRRACDGAETAPXSGWHAAALHATNVFRKVEPDWLQSYI 158
           G D     C   +T P  G      H  N F  V P+W + Y+
Sbjct: 274 GIDGVETCCVPYQTTPGMGQQYIFYHGRNHFLDVSPEWREPYL 316


>SB_1354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
 Frame = +3

Query: 405 CAG--NTPSCSGNTRTPREAPLSSQSWSSKSNVASREKRISGIRPRFHYSAGYRIVTQYP 578
           CAG  +   C        E P   +  S ++  AS     SG    FH  +G RI  Q  
Sbjct: 27  CAGAHHRSICENQASGQTETPQQERGESEQAGEASSNHVTSGFAESFHVGSGTRIALQTA 86

Query: 579 AG 584
            G
Sbjct: 87  QG 88


>SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1577

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
 Frame = +3

Query: 405 CAG--NTPSCSGNTRTPREAPLSSQSWSSKSNVASREKRISGIRPRFHYSAGYRIVTQYP 578
           CAG  +   C        E P   +  S ++  AS     SG    FH  +G RI  Q  
Sbjct: 381 CAGAHHLSICENQASGQTETPQQERGESEQAGEASSNHVTSGFAESFHVGSGTRIALQTA 440

Query: 579 AG 584
            G
Sbjct: 441 QG 442


>SB_24453| Best HMM Match : Rho_N (HMM E-Value=4.8)
          Length = 423

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -2

Query: 493 LDLLDHDCDDKGASLGVRVLPEQLGVLPAHGAVAARQLGFDDDLPKLSCELRWFIAQRD- 317
           L ++D  CDD  A +      E +GV    G V   +L  D D   L  EL WF A+   
Sbjct: 67  LKVMDEYCDDMCAWI------EAMGVAAERGQVEVVKLLIDLDHFGLGEELGWFTAEAAY 120

Query: 316 RGRVFIVELHR 284
            G V +++L R
Sbjct: 121 NGHVEVLKLLR 131


>SB_23649| Best HMM Match : BESS (HMM E-Value=6.1)
          Length = 244

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -2

Query: 493 LDLLDHDCDDKGASLGVRVLPEQLGVLPAHGAVAARQLGFDDDLPKLSCELRWFIAQRD- 317
           L ++D  CDD  A +      E +GV    G V   +L  D D   L  EL WF A+   
Sbjct: 67  LKVMDEYCDDMCAWI------EAMGVAAERGQVEVVRLLIDLDHFGLDEELGWFTAEAAY 120

Query: 316 RGRVFIVELHR 284
            G V +++L R
Sbjct: 121 NGHVEVLKLLR 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,830,528
Number of Sequences: 59808
Number of extensions: 459561
Number of successful extensions: 1243
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)