Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021145
         (767 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78240.1 68414.m09118 dehydration-responsive protein-related ...    30   2.0  
At3g51650.1 68416.m05664 expressed protein                             28   6.0  
At3g51640.1 68416.m05663 expressed protein                             28   6.0  
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha...    28   6.0  

>At1g78240.1 68414.m09118 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 684

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 426 CSGNTRTPREAPLSSQS-WSSKSNVASREKRISGIRP 533
           C G TR+ R  P+  ++ W S+SN+   E  + G+ P
Sbjct: 451 CIGGTRSRRWIPIEGRTRWPSRSNMNKTELSLYGLHP 487


>At3g51650.1 68416.m05664 expressed protein
          Length = 826

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 414 NTPSCSGNTRTPREAPLS 467
           NTPSC  N  +P E+PLS
Sbjct: 622 NTPSCEANKPSPIESPLS 639


>At3g51640.1 68416.m05663 expressed protein
          Length = 826

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 414 NTPSCSGNTRTPREAPLS 467
           NTPSC  N  +P E+PLS
Sbjct: 622 NTPSCEANKPSPIESPLS 639


>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
           putative contains Pfam PF00400: WD domain, G-beta
           repeat; similar to Coatomer alpha subunit (Alpha-coat
           protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
           [Homo sapiens]
          Length = 1216

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = +3

Query: 414 NTPSCSGNTR-----TPREAPLSSQSWSSKSNVASRE 509
           +TP  S N R     TP +    SQSWS KS++A+ +
Sbjct: 888 DTPKASANARSSVFVTPPQGMPVSQSWSQKSSLAAEQ 924


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,059,823
Number of Sequences: 28952
Number of extensions: 314027
Number of successful extensions: 910
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)