Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021144
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    26   5.6  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    26   5.6  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    26   7.4  
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe...    26   7.4  
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    25   9.7  

>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 653 SLPLPSIVWIGLKVSLPCYKIFKKKKSSFQA*LIFRHFTLSN*LW 787
           ++PL +  W+ L  SL  YK     K +F   L  R   L N  W
Sbjct: 212 NVPLDTDYWVDLLNSLKSYKAIAYLKKTFNEELQIRKNKLDNEEW 256


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 370 LTIDLDHPHYTLYRYPIQCFIYLCTN*SSDLSKK 269
           +T+DLD P+Y   R+   C  +L TN   + SK+
Sbjct: 238 ITLDLDVPNYETNRFETHC-NWLLTNIPIEASKR 270


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 260 LINYRLEHTFGYLVTVEENDIMCIIYGNDL 171
           L++++LEH    L    +ND + ++YG  L
Sbjct: 399 LLSWKLEHEVNNLSWSVKNDGLAVVYGKSL 428


>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 357 STILIIHSIDILSNVLFICVL 295
           S +L++H+I+  SNV  +C L
Sbjct: 111 SNMLLLHTIETTSNVFAVCAL 131


>SPBC146.11c |mug97|meu33|meiotically upregulated gene
           Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 424 YESNVWYFLVILFTASGNLTIDL 356
           Y+ N+W   ++LF+A G++ I L
Sbjct: 278 YKINMWVLSLLLFSAGGSVLIGL 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,127,637
Number of Sequences: 5004
Number of extensions: 63653
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)