Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021144
         (817 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006662-2|AAL06035.1|  535|Caenorhabditis elegans Hypothetical ...    29   5.3  
AC006662-1|AAM98008.2|  707|Caenorhabditis elegans Hypothetical ...    29   5.3  
AF025461-7|AAB70997.2|  330|Caenorhabditis elegans Seven tm rece...    28   7.0  
AF016444-13|AAB65926.1|  330|Caenorhabditis elegans Serpentine r...    28   9.2  

>AC006662-2|AAL06035.1|  535|Caenorhabditis elegans Hypothetical
           protein H23L24.3a protein.
          Length = 535

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 287 RLISTQINKTLDRISIECIMRMVEVNRQVTRGRKQNYKEVPN 412
           RL   +++ T+  + I  +   +  NR  T GRKQN+ +  N
Sbjct: 479 RLRRAEVDSTIGNVEIYMLPSRMARNRSGTNGRKQNFTDDNN 520


>AC006662-1|AAM98008.2|  707|Caenorhabditis elegans Hypothetical
           protein H23L24.3b protein.
          Length = 707

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 287 RLISTQINKTLDRISIECIMRMVEVNRQVTRGRKQNYKEVPN 412
           RL   +++ T+  + I  +   +  NR  T GRKQN+ +  N
Sbjct: 651 RLRRAEVDSTIGNVEIYMLPSRMARNRSGTNGRKQNFTDDNN 692


>AF025461-7|AAB70997.2|  330|Caenorhabditis elegans Seven tm
           receptor protein 148 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 439 SGLWRVEERSTISLY*DATVASRRF*TQRHKLCLKLLYSISY 564
           SG +  +  + + +Y   T A + F T RH +C   LYS+ Y
Sbjct: 10  SGFFMAQVTNALLVYLIWTKAEKLFGTYRHVMCTFALYSLVY 51


>AF016444-13|AAB65926.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 8 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +3

Query: 66  KKKITMITISNDQTIDVSLKSQ*HLTFDVYDTIRSQVITIDNT-HNVIFLHGHEIAKCVF 242
           + K+ M T+SN  +++ +LKS    T  V+  ++S  +T+  T   +IF  G  I K  +
Sbjct: 217 RAKLLMSTLSNRYSLEQNLKSM--RTLKVFANLQSIFLTLQMTIFIIIFYLGLAIEKTTY 274

Query: 243 *TIIY*QAAF 272
             +I   A +
Sbjct: 275 IALIELNAGY 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,031,354
Number of Sequences: 27780
Number of extensions: 345976
Number of successful extensions: 663
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)