Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021143X
(501 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 117 5e-27
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 7e-21
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 86 2e-17
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 79 2e-15
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 38 0.004
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.23
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 30 0.93
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_27382| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_20174| Best HMM Match : DedA (HMM E-Value=3.7) 28 3.8
SB_5844| Best HMM Match : RA (HMM E-Value=2.1e-10) 28 5.0
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 28 5.0
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_30629| Best HMM Match : ERG4_ERG24 (HMM E-Value=0) 27 8.7
SB_13780| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_35901| Best HMM Match : AT_hook (HMM E-Value=0.34) 27 8.7
SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073) 27 8.7
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 117 bits (282), Expect = 5e-27
Identities = 52/56 (92%), Positives = 55/56 (98%)
Frame = +2
Query: 254 TFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMMTGTSQ 421
+FKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNM+TGTSQ
Sbjct: 5 SFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 7e-21
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 99 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 245
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 85.8 bits (203), Expect = 2e-17
Identities = 39/99 (39%), Positives = 60/99 (60%)
Frame = +2
Query: 203 QTYHREVREGGPGNG*RTFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGH 382
+ Y RE +E T+ +W LD + ER++G T+++ F+T + T++DAPGH
Sbjct: 177 EKYEREAKEKNR----ETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGH 232
Query: 383 RDFIKNMMTGTSQAACAVLTVSAGTGEFEAGISKNGQTR 499
+ F+ NM++G +QA VL +SA GEFE G + GQTR
Sbjct: 233 KSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTR 271
Score = 32.3 bits (70), Expect = 0.23
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3
Query: 183 YKCGGIDKRTIEKFEKEAQEMGK 251
Y G +DKRT+EK+E+EA+E +
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNR 188
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 79.0 bits (186), Expect = 2e-15
Identities = 34/62 (54%), Positives = 45/62 (72%)
Frame = +2
Query: 314 IDIALWKFETSKYYVTIIDAPGHRDFIKNMMTGTSQAACAVLTVSAGTGEFEAGISKNGQ 493
+D+ L +F+T +T++DAPGH+DFI NM+TG +QA A+L V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 494 TR 499
TR
Sbjct: 61 TR 62
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +2
Query: 278 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMMTGTSQAACAVLTVSAGT 457
D ++ ER+RGI++ ++ F + I+D PGH+DF ++ + ++ +
Sbjct: 55 DFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAK 114
Query: 458 G 460
G
Sbjct: 115 G 115
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.23
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 99 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 194
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 30.3 bits (65), Expect = 0.93
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 13/75 (17%)
Frame = +2
Query: 278 DKLKAERERGITIDIALWKFETSK-------------YYVTIIDAPGHRDFIKNMMTGTS 418
DK +ERGIT+D+ F+ + +T++D PGH IK ++ G +
Sbjct: 65 DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTII-GGA 123
Query: 419 QAACAVLTVSAGTGE 463
Q T+ G G+
Sbjct: 124 QIIGECGTIEGGFGQ 138
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 114 THINIVVIGHVDSGKSTTTGHLIY 185
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1845
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 195 GIDKRTIEKFEKEAQEMGKGPSNMLG 272
GI+ T+EK + + E GKGPS G
Sbjct: 970 GIESATVEKLDLQESEHGKGPSTEEG 995
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +2
Query: 272 VLDKLKAERERGITI 316
VLDKL+ ERERGIT+
Sbjct: 1977 VLDKLQVERERGITV 1991
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 123 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 221
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_27382| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 266 AWVLDKLKAERERGI--TIDIALWKFETSKYYVTIIDAPGHRDFIKNMMTGTSQAACAVL 439
AW L RG+ +I+I ++ + + I ++ HR ++T T AACAV
Sbjct: 158 AWDFRTLFFWDTRGVLFSINIIVFSYSIQAVVIDIEESMTHRSRFNWVLTMTYSAACAVK 217
Query: 440 TVSAGTG 460
T+ A G
Sbjct: 218 TLFAVFG 224
>SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)
Length = 228
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 117 HINIVVIGHVDSGKSTTTGHLIY---KCGGIDKRTIEKFEKEAQEMGKGPSNML 269
H+ VIGH+ ST GHLI C + + + + F+++ + K +N+L
Sbjct: 169 HLTSTVIGHLQHLTSTVIGHLIVIDGDCHSLTEISNQGFDRKTNLLCKLGTNIL 222
>SB_5844| Best HMM Match : RA (HMM E-Value=2.1e-10)
Length = 280
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 96 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGP 257
+M KEK IV+ G SGK+ +T +++ + ++T + + E +G GP
Sbjct: 225 RMLKEKKSQCIVISGESGSGKTESTKLIVHHLTALSRKT-QASDVEKTILGVGP 277
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 120 INIVVIGHVDSGKSTTTGHLIYKCGGIDK---RTIEKFEKEAQEMGKGPSNMLG 272
+ + V+G+VD+GKST G L + G +D ++ + EM G ++ +G
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTH--GELDNGRGTARQRLFRHKHEMESGRTSSVG 281
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 356 VTIIDAPGHRDFIKNMMTGTSQAACAVLTVSAGTG 460
+T ID PGH F G + VL V+A G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_30629| Best HMM Match : ERG4_ERG24 (HMM E-Value=0)
Length = 486
Score = 27.1 bits (57), Expect = 8.7
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = -1
Query: 96 LVSGVMGILISLFHFTKQYFFDTH 25
+++ ++GIL++ F + K ++F TH
Sbjct: 197 VLANILGILLTAFVYVKAHYFPTH 220
>SB_13780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -1
Query: 345 LVSNFQRAISIVIPRSRSAFSLSNTQAYLKVLYPFPGPPSRTSRWYVCQYHHICRSSDQ 169
+++ +Q IVI RS AF +Q + + PF V +Y +I S+DQ
Sbjct: 205 VLTEYQEGYGIVISRSVRAFQSKFSQVFWRKCSPFKWVRPLVREKGVKKYFYIWYSTDQ 263
>SB_35901| Best HMM Match : AT_hook (HMM E-Value=0.34)
Length = 394
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 108 PCPFLVSGVMGILISLFHFTKQYFFDT 28
PCPF+ S + + +S F+K+ F DT
Sbjct: 368 PCPFVASIISLLCLSAAFFSKRAFSDT 394
>SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)
Length = 863
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 300 SRSAFSLSNTQAYLKVLYPFPGPPSRTSRWYVCQYHHIC 184
S S S S + + P P P S + +Y C +H+ C
Sbjct: 163 SSSTISPSQSSSTTAATSPPPPPSSHFNCYYFCYHHYCC 201
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,346,695
Number of Sequences: 59808
Number of extensions: 291118
Number of successful extensions: 725
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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