Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021143X
(501 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 154 3e-38
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 154 3e-38
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 154 3e-38
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 154 3e-38
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 94 5e-20
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 79 1e-15
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 60 6e-10
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 60 6e-10
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 42 2e-04
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 40 7e-04
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 40 7e-04
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 38 0.004
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 38 0.005
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 35 0.027
At5g13650.2 68418.m01585 elongation factor family protein contai... 35 0.035
At5g13650.1 68418.m01584 elongation factor family protein contai... 35 0.035
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 31 0.33
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 31 0.33
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 30 1.0
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 29 1.8
At1g80130.1 68414.m09379 expressed protein 28 3.1
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 27 7.1
At1g08440.1 68414.m00933 hypothetical protein contains Pfam prof... 27 7.1
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 27 9.4
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 27 9.4
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 27 9.4
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 27 9.4
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 154 bits (374), Expect = 3e-38
Identities = 70/83 (84%), Positives = 77/83 (92%)
Frame = +2
Query: 251 RTFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMMTGTSQAAC 430
R+FKYAWVLDKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNM+TGTSQA C
Sbjct: 52 RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADC 111
Query: 431 AVLTVSAGTGEFEAGISKNGQTR 499
AVL + + TG FEAGISK+GQTR
Sbjct: 112 AVLIIDSTTGGFEAGISKDGQTR 134
Score = 97.1 bits (231), Expect = 6e-21
Identities = 45/51 (88%), Positives = 46/51 (90%)
Frame = +3
Query: 99 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 251
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK 51
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 154 bits (374), Expect = 3e-38
Identities = 70/83 (84%), Positives = 77/83 (92%)
Frame = +2
Query: 251 RTFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMMTGTSQAAC 430
R+FKYAWVLDKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNM+TGTSQA C
Sbjct: 52 RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADC 111
Query: 431 AVLTVSAGTGEFEAGISKNGQTR 499
AVL + + TG FEAGISK+GQTR
Sbjct: 112 AVLIIDSTTGGFEAGISKDGQTR 134
Score = 97.1 bits (231), Expect = 6e-21
Identities = 45/51 (88%), Positives = 46/51 (90%)
Frame = +3
Query: 99 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 251
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK 51
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 154 bits (374), Expect = 3e-38
Identities = 70/83 (84%), Positives = 77/83 (92%)
Frame = +2
Query: 251 RTFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMMTGTSQAAC 430
R+FKYAWVLDKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNM+TGTSQA C
Sbjct: 52 RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADC 111
Query: 431 AVLTVSAGTGEFEAGISKNGQTR 499
AVL + + TG FEAGISK+GQTR
Sbjct: 112 AVLIIDSTTGGFEAGISKDGQTR 134
Score = 97.1 bits (231), Expect = 6e-21
Identities = 45/51 (88%), Positives = 46/51 (90%)
Frame = +3
Query: 99 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 251
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK 51
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 154 bits (374), Expect = 3e-38
Identities = 70/83 (84%), Positives = 77/83 (92%)
Frame = +2
Query: 251 RTFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMMTGTSQAAC 430
R+FKYAWVLDKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNM+TGTSQA C
Sbjct: 52 RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADC 111
Query: 431 AVLTVSAGTGEFEAGISKNGQTR 499
AVL + + TG FEAGISK+GQTR
Sbjct: 112 AVLIIDSTTGGFEAGISKDGQTR 134
Score = 97.1 bits (231), Expect = 6e-21
Identities = 45/51 (88%), Positives = 46/51 (90%)
Frame = +3
Query: 99 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 251
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK 51
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 93.9 bits (223), Expect = 5e-20
Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Frame = +2
Query: 209 YHREVREGGPGNG*RTFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRD 388
Y +E + G G+ F YAW LD+ ERERGIT+ +A+ F + +++V ++D+PGH+D
Sbjct: 274 YEKEAKLQGKGS----FAYAWALDESAEERERGITMTVAVAYFNSKRHHVVLLDSPGHKD 329
Query: 389 FIKNMMTGTSQAACAVLTVSAGTGEFEAGISK-NGQTR 499
F+ NM+ G +QA A+L + A G FEAG GQTR
Sbjct: 330 FVPNMIAGATQADAAILVIDASVGAFEAGFDNLKGQTR 367
Score = 56.0 bits (129), Expect = 1e-08
Identities = 22/47 (46%), Positives = 35/47 (74%)
Frame = +3
Query: 114 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKG 254
+ +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKG
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKG 284
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 79.4 bits (187), Expect = 1e-15
Identities = 35/78 (44%), Positives = 51/78 (65%)
Frame = +2
Query: 266 AWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMMTGTSQAACAVLTV 445
A+++D + ER +G T+++ FET TI+DAPGH+ ++ NM++G SQA VL +
Sbjct: 151 AYIMDTNEEERLKGKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVI 210
Query: 446 SAGTGEFEAGISKNGQTR 499
SA GEFE G + GQTR
Sbjct: 211 SARKGEFETGYERGGQTR 228
Score = 58.8 bits (136), Expect = 2e-09
Identities = 23/48 (47%), Positives = 36/48 (75%)
Frame = +3
Query: 108 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 251
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ +
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSR 145
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 60.5 bits (140), Expect = 6e-10
Identities = 27/62 (43%), Positives = 38/62 (61%)
Frame = +2
Query: 275 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMMTGTSQAACAVLTVSAG 454
+D ER RGITI+ A ++ET + +D PGH D++KNM+TG +Q A+L VS
Sbjct: 117 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA 176
Query: 455 TG 460
G
Sbjct: 177 DG 178
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 96 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK 230
K ++K H+NI IGHVD GK+T T L I +K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 60.5 bits (140), Expect = 6e-10
Identities = 27/62 (43%), Positives = 40/62 (64%)
Frame = +2
Query: 275 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMMTGTSQAACAVLTVSAG 454
+DK E++RGITI A ++ET+K + +D PGH D++KNM+TG +Q +L VS
Sbjct: 105 IDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGP 164
Query: 455 TG 460
G
Sbjct: 165 DG 166
Score = 32.7 bits (71), Expect = 0.14
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 105 KEKTHINIVVIGHVDSGKSTTT 170
+ K H+N+ IGHVD GK+T T
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLT 84
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +2
Query: 275 LDKLKAERERGITIDIAL----WKFETSKYYVTIIDAPGHRDFIKNMMTGTSQAACAVLT 442
LD + ERERGITI + + +E + + + +ID PGH DF + + A+L
Sbjct: 123 LDNMDLERERGITIKLQAARMRYVYEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLV 182
Query: 443 VSAGTG 460
V A G
Sbjct: 183 VDASQG 188
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 123 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 221
N +I H+D GKST L+ G + R +++
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDMKE 120
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 40.3 bits (90), Expect = 7e-04
Identities = 25/75 (33%), Positives = 34/75 (45%)
Frame = +2
Query: 275 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMMTGTSQAACAVLTVSAG 454
+D + ERE+GITI A Y V IID PGH DF + A+L + +
Sbjct: 108 MDSMDLEREKGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSV 167
Query: 455 TGEFEAGISKNGQTR 499
G I+ + Q R
Sbjct: 168 GGVQSQSITVDRQMR 182
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 123 NIVVIGHVDSGKSTTTGHLIYKCGGI 200
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 40.3 bits (90), Expect = 7e-04
Identities = 25/75 (33%), Positives = 34/75 (45%)
Frame = +2
Query: 275 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMMTGTSQAACAVLTVSAG 454
+D + ERE+GITI A Y V IID PGH DF + A+L + +
Sbjct: 108 MDSMDLEREKGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSV 167
Query: 455 TGEFEAGISKNGQTR 499
G I+ + Q R
Sbjct: 168 GGVQSQSITVDRQMR 182
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 123 NIVVIGHVDSGKSTTTGHLIYKCGGI 200
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 37.9 bits (84), Expect = 0.004
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +2
Query: 275 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 391
+D ++ E+ERGITI A K+ + IID PGH DF
Sbjct: 136 MDWMEQEQERGITITSAATTTFWDKHRINIIDTPGHVDF 174
Score = 32.7 bits (71), Expect = 0.14
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 111 KTHINIVVIGHVDSGKSTTTGHLIYKCG 194
K + NI ++ H+D+GK+TTT ++Y G
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG 121
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 37.5 bits (83), Expect = 0.005
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +2
Query: 275 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMMTGTSQAACAVLTVSAG 454
+D L E+ R IT+ + + Y + +ID+PGH DF + T + A++ V A
Sbjct: 49 MDYLDEEQRRAITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAV 108
Query: 455 TG 460
G
Sbjct: 109 EG 110
Score = 32.7 bits (71), Expect = 0.14
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 123 NIVVIGHVDSGKSTTTGHLIYKCGG 197
NI ++ HVD GK+T HLI GG
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG 35
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 35.1 bits (77), Expect = 0.027
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Frame = +2
Query: 275 LDKLKAERERGITIDIALWKF---------ETSKYYVTIIDAPGHRDFIKNMMTGTSQAA 427
LDKL +RERGIT+ E S Y + +ID PGH DF + S
Sbjct: 103 LDKL--QRERGITVKAQTATMFYENKVEDQEASGYLLNLIDTPGHVDFSYEVSRSLSACQ 160
Query: 428 CAVLTVSAGTG 460
A+L V A G
Sbjct: 161 GALLVVDAAQG 171
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 96 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK 206
K EK N +I H+D GKST L+ G I K
Sbjct: 60 KFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK 95
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 34.7 bits (76), Expect = 0.035
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = +2
Query: 272 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 391
++D ERERGITI V IID PGH DF
Sbjct: 120 IMDSNDLERERGITILSKNTSITYKNTKVNIIDTPGHSDF 159
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 34.7 bits (76), Expect = 0.035
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = +2
Query: 272 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 391
++D ERERGITI V IID PGH DF
Sbjct: 119 IMDSNDLERERGITILSKNTSITYKNTKVNIIDTPGHSDF 158
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 31.5 bits (68), Expect = 0.33
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = +2
Query: 293 ERERGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKNMMTGTSQAACAVLTVSAGT 457
E+ER I+I + L + Y I+D PGH +F M A AVL V A
Sbjct: 185 EQERNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAE 244
Query: 458 G 460
G
Sbjct: 245 G 245
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 31.5 bits (68), Expect = 0.33
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = +2
Query: 293 ERERGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKNMMTGTSQAACAVLTVSAGT 457
E+ER I+I + L + Y I+D PGH +F M A AVL V A
Sbjct: 185 EQERNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAE 244
Query: 458 G 460
G
Sbjct: 245 G 245
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 29.9 bits (64), Expect = 1.0
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -3
Query: 478 DTSFEFTGTGRYGEHSASGLRGSCHHVLDEISVSRSINDGNIVLA 344
D F+G G+ + LRG+ HHVLDE RS++D VL+
Sbjct: 352 DKLIHFSGC-EMGQACSIVLRGASHHVLDE--AERSLHDALCVLS 393
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 123 NIVVIGHVDSGKSTTTGHLIYKCG 194
N+ VI HVD GKST T L+ G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAG 44
>At1g80130.1 68414.m09379 expressed protein
Length = 305
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 206 TYHREVREGGPGNG*RTFKYAWVLDKLKAERER 304
TY+RE+ + PGN T YA L ++K + ++
Sbjct: 167 TYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKK 199
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 356 VTIIDAPGHRDFIKNMMTGTSQAACAVLTVSAGTG 460
+T +D PGH F + G + VL V+A G
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVVAADDG 304
>At1g08440.1 68414.m00933 hypothetical protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 501
Score = 27.1 bits (57), Expect = 7.1
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = -3
Query: 478 DTSFEFTGTGRYGEHSASGLRGSCHHVLDEISVSRSINDGNIVLASLELPESNIDCDTT 302
DTS + +GE S SCHHV +I+ SI+D N + + + + CD T
Sbjct: 435 DTSNNVDQSQSHGEISVD----SCHHVTIKINDDDSIHDKN-EDGDIHVHTNRVSCDHT 488
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 341 TSKYYVTIIDAPGHRDFIKNMMTGTSQAACAVLTVSA 451
T + +V+ +D PGH + M+ G + A+L ++A
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAA 160
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 341 TSKYYVTIIDAPGHRDFIKNMMTGTSQAACAVLTVSA 451
T + +V+ +D PGH + M+ G + A+L ++A
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAA 160
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 123 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 245
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 123 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 245
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,769,949
Number of Sequences: 28952
Number of extensions: 206808
Number of successful extensions: 592
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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