Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021142
         (749 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    29   0.052
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.65 
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   3.4  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    23   3.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   3.4  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   8.0  

>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 0.052
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 624 AKVGAQDGLAGLLVRQRDVDELVQTAGTQDGRVDDVRS 737
           AK    +GLAG+ V   D D+ + + GT+D  +  +++
Sbjct: 326 AKYAKDNGLAGVAVWSIDTDDFLGSCGTKDALLQAIKN 363


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 285 NLKLVPKPRLCCRVCANISYLRMSLSDTERRANF 386
           N+KL   P  CC +C N + L  S  +  ++  F
Sbjct: 718 NMKLEKVPGECCAICVNATSLVESNRNVPQKCIF 751


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
 Frame = -2

Query: 547 RRYASEPASWP---FAGHRGGDPSREESPAASRRCRYGHGRGRPVPEISR 407
           ++  S+P  WP   +       PS   SP   R  + G  +G P  E  R
Sbjct: 181 KKTESQPMLWPAWVYCTRYSDRPSSGRSPRTRRVKKPGAKQGAPTAEEKR 230


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 624 AKVGAQDGLAGLLVRQRDVDELVQTAGTQD 713
           A+    + LAG+++   + D+L  T GT++
Sbjct: 335 AQYAKDNNLAGVMIWSIETDDLHATCGTKN 364


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 325  TLQQSRGFGTNFRFPTNAGATGGTVL 248
            T   S    TN   PTNAG T G +L
Sbjct: 1013 TSNSSVNANTN-NIPTNAGTTPGAIL 1037


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/29 (24%), Positives = 19/29 (65%)
 Frame = +3

Query: 648 LAGLLVRQRDVDELVQTAGTQDGRVDDVR 734
           +AGL++   D+D+ +   G ++G ++ ++
Sbjct: 346 MAGLMIWTVDMDDFLGLCGPKNGLLEVIK 374


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,414
Number of Sequences: 336
Number of extensions: 3772
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)