Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021142
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.3  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   9.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.3  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 373 RSVSDNDIRKYEMF 332
           +S +D+DI KY+MF
Sbjct: 190 KSCTDSDIEKYKMF 203


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/41 (21%), Positives = 17/41 (41%)
 Frame = -3

Query: 744 HKQTGHHRPGHPASRPSGPAHLHPAAGREVPRGHPARQPSQ 622
           H+Q  HH+  HP ++            ++ P+    +Q  Q
Sbjct: 811 HQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQ 851



 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 512 EWPACRLAGISPSGQRH*SLASPWRCKTSQ 601
           EWP    A I P  Q+  + A+P++   +Q
Sbjct: 751 EWPGLEHANIGPYIQKMIAAAAPFKGMETQ 780


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 479 GVASSKPPLPLWTWTR 432
           G AS+  P PL+ W R
Sbjct: 250 GAASANLPSPLYPWMR 265


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 18/65 (27%), Positives = 23/65 (35%)
 Frame = +2

Query: 146  SRWWRCPEVASETQFRCTGRRHPPPPGTWAGRPLKYRAPCSSRVCWESEVGSEAAALLQG 325
            S W     +  E       RR PPPP   +   L +R         E E+   A   L G
Sbjct: 1680 STWDPRRHMYEELNHCAPNRRCPPPPRMGSAEGLSHRG-------MEDEICPYATFHLLG 1732

Query: 326  LREHL 340
             RE +
Sbjct: 1733 FREEM 1737


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 371 LRVRQRHPQVRDVRADPAAEPRLRNQ 294
           ++V Q+   + D   DP++EP + +Q
Sbjct: 110 MQVPQQGASIDDSDPDPSSEPTVHSQ 135


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 371 LRVRQRHPQVRDVRADPAAEPRLRNQ 294
           ++V Q+   + D   DP++EP + +Q
Sbjct: 558 MQVPQQGASIDDSDPDPSSEPTVHSQ 583


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,091
Number of Sequences: 438
Number of extensions: 5027
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)