Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021141
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch... 109 4e-25
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 54 3e-08
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 28 1.2
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 2.1
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 27 2.8
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 26 6.4
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 26 6.4
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 6.4
>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 341
Score = 109 bits (262), Expect = 4e-25
Identities = 53/97 (54%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Frame = +3
Query: 240 PRRRSDLSHMNTPAKVSGHKGPEE-LSAAIKDADVVVIPAGVPRKPGMTRDDLFNTNASI 416
P +D+ H+NT + V G+ ++ L A+ ADVV+IPAGVPRKPGMTRDDLF TNASI
Sbjct: 66 PGVAADIGHINTTSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASI 125
Query: 417 VRDIALSIAQNAPKAIVAIITNPVNSTVPIALKCSRR 527
VRD+A + + P+A ++TNPVNSTVPI K R
Sbjct: 126 VRDLAFAAGETCPEAKYLVVTNPVNSTVPIFKKALER 162
Score = 52.0 bits (119), Expect = 8e-08
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +2
Query: 512 EVLKKAGVYDPNRVLGVTTLDVSRCHLRRRDQWRGPNSVA-VPVIGGHSGITIIPILSQ 685
+ L++ GV+ P + GVTTLD R G + +PV+GGHSG TI+P+LSQ
Sbjct: 158 KALERVGVHQPKHLFGVTTLDSVRASRFTSQVTNGKAELLHIPVVGGHSGATIVPLLSQ 216
Score = 50.8 bits (116), Expect = 2e-07
Identities = 28/53 (52%), Positives = 34/53 (64%)
Frame = +1
Query: 97 KNFSTTSQRNFKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPVTPGVAA 255
++FSTTS R FK IGQPL++LLK N V+ LAL+DI PGVAA
Sbjct: 19 RSFSTTSSRAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRG-APGVAA 70
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 53.6 bits (123), Expect = 3e-08
Identities = 34/97 (35%), Positives = 49/97 (50%)
Frame = +3
Query: 327 KDADVVVIPAGVPRKPGMTRDDLFNTNASIVRDIALSIAQNAPKAIVAIITNPVNSTVPI 506
KDA VVI AG +KPG TR DL N SI ++I + + AI+ + TNPV+
Sbjct: 86 KDATAVVITAGKNQKPGETRMDLLKANISIFKEILREVTKYTKDAILLVATNPVDVLTYA 145
Query: 507 ALKCSRRRECTTRTACSASPLWTYRAATFVGEINGVD 617
LK + R S + + T R +G++ G+D
Sbjct: 146 TLKLTGFP--AERVIGSGTIIDTARFQYLIGKLYGLD 180
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 446 LSNGQSNVTDNGSISVE*VITGHSRFTGYSCW 351
L NG + D + SV V+TGH+R CW
Sbjct: 43 LVNGSVVIWDLSTFSVSRVLTGHTRAIQSVCW 74
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -1
Query: 307 SGPLWPLTLAGVFMWERSLRRRGSQALCRIKPAWSPEDSASVEGPKAGRYHRRHQRPPL* 128
SG L+ L FM++ L R ++ ++ +WS +D+ + H P L
Sbjct: 794 SGLLFSLRAHDTFMFDGLLDRLNEESRTKLVSSWSKQDAFDYSKSSTHQEHLSKNLPTLN 853
Query: 127 SSS 119
+SS
Sbjct: 854 TSS 856
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 75 PCCTKWCKELFHHITEEL*SGGRWCR 152
P C WC ++ IT+ + G WCR
Sbjct: 319 PDCKSWCGIIYQFITDS--NVGMWCR 342
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 296 VAADLGWGVHVGKVAATPGVTGAMSYKASLVTRGFCFSRRAKGW 165
VA DL + + A T + G + +K L+T G +R AK W
Sbjct: 631 VARDLSYNKRLN--AKTVTLEGTVIHKTGLITGGSSNNRSAKHW 672
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 617 PNSVAVPVIGGHSGITIIPILSQCQPALKLSDR 715
P +P+IGGH G ++ + LK+ DR
Sbjct: 58 PLPAKMPLIGGHEGAGVVVKVGAGVTRLKIGDR 90
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 63 KTCRPCCTKWCKELFHHITEEL*SGGRWCRRWY 161
K C+ C + C+ +HHI E+L CRR Y
Sbjct: 33 KPCQ-CGYRVCRFCWHHIKEDLNGRCPACRRLY 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,949,774
Number of Sequences: 5004
Number of extensions: 62292
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -