Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021141
(733 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31) 79 3e-15
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_43634| Best HMM Match : Sushi (HMM E-Value=1.2e-16) 29 2.9
SB_38683| Best HMM Match : Ldh_1_N (HMM E-Value=1.7e-11) 29 3.9
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_58558| Best HMM Match : EGF (HMM E-Value=0) 29 5.1
SB_22900| Best HMM Match : DUF1399 (HMM E-Value=0.00019) 29 5.1
SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0) 29 5.1
SB_22679| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 6.8
SB_2479| Best HMM Match : SecA_PP_bind (HMM E-Value=0.94) 28 9.0
SB_53803| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_2045| Best HMM Match : EGF (HMM E-Value=0) 28 9.0
>SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)
Length = 368
Score = 79.4 bits (187), Expect = 3e-15
Identities = 34/55 (61%), Positives = 47/55 (85%)
Frame = +3
Query: 282 KVSGHKGPEELSAAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIVRDIALSIAQ 446
+V+ H+GP++L AA++ VV IPAGVPRKPGMTRDDLFNTNASIV++++ + A+
Sbjct: 55 QVTSHQGPDDLKAALEGCSVVAIPAGVPRKPGMTRDDLFNTNASIVKNLSEACAK 109
Score = 55.6 bits (128), Expect = 4e-08
Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Frame = +2
Query: 548 RVLGVTTLDVSRCHLRRRD-QWRGPNSVAVPVIGGHSGITIIPILSQCQP 694
++LGVTTLD+ R H + + N++ +PVIGGHSG+TI+P+LSQ P
Sbjct: 109 KILGVTTLDIVRAHTFVAEAKGLDVNNIKIPVIGGHSGVTILPLLSQTTP 158
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Frame = -3
Query: 497 CRVNRVCDDGHNSFGCILSNGQS----NVTDNGSISVE*V--ITGHSRFTGYSC 354
C + C DG NS+ C + G + NVT N IS + T H GYSC
Sbjct: 674 CSEHGACIDGVNSYTCACNLGYTGSTCNVTVNDCISNPCIHGATCHDGLLGYSC 727
>SB_43634| Best HMM Match : Sushi (HMM E-Value=1.2e-16)
Length = 986
Score = 29.5 bits (63), Expect = 2.9
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
Frame = +3
Query: 288 SGHKGPEELSAAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIVRD--IALSIAQNAPKA 461
S HK KD D+ I G G +++L + + +RD I L +
Sbjct: 396 SSHKKSATTLKNEKDFDIYAIAVG----KGPNKEELQSLVSQPIRDHVITLKHIGDVFTG 451
Query: 462 IVAIITNPVNSTVPIALKCSRRRECTTRTACSASPLWTYRAATF 593
+ +IT P N + ++ ++ T R +AS +W ++ F
Sbjct: 452 VRKVITTPENEFAQCGISDTKSKKRTVRGNKAASGVWPWQIGIF 495
>SB_38683| Best HMM Match : Ldh_1_N (HMM E-Value=1.7e-11)
Length = 462
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +3
Query: 315 SAAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIVRDIALSIAQNA-PKAIVAIITNPVN 491
+ A KDA VVV+ G G + + ++A + RD ++ +A P V P N
Sbjct: 202 AVAFKDASVVVLLDGKAINEGTDKKEYLLSHAKLFRDYGKALEAHAKPDCKVLTAGGPAN 261
Query: 492 STVPIALK 515
+ IA K
Sbjct: 262 FSTFIASK 269
>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2644
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 174 GPSTEAESSGDQAG-FIRHSACDPRRRSDLSHMNT 275
GPST+ ++G +AG ++ DPR+R DL+H +
Sbjct: 2126 GPSTD-HTTGTKAGSYMFIETSDPRKRGDLAHFES 2159
>SB_58558| Best HMM Match : EGF (HMM E-Value=0)
Length = 1101
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = -3
Query: 497 CRVNRVCDDGHNSFGCILSNGQSNVTDNGSISVE*VITGHSRFTGYSCWDDYN 339
CR N C D HN++ C + G V N I++ I + G+ C D N
Sbjct: 168 CRNNGTCTDMHNAYRCQCTQG--FVGKNCQININDCIPDPCQNGGWCCCDLVN 218
>SB_22900| Best HMM Match : DUF1399 (HMM E-Value=0.00019)
Length = 696
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 299 LVAADLGWGVHVG-KVAATPGVTGAMSYKASLVTRGFCFSRRAKGW 165
L+ + WG+ +G KV ++ K L+ +G+C+ R+ + W
Sbjct: 548 LIRGEEDWGILMGRKVCLHGNQAQILALKLFLMGKGYCYVRKYRDW 593
>SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 2065
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 175 ALLLKQNPLVTRLALYDIAPVTPGVAATFPT*TPQPRSAATRDLRSYQQPSKMLM 339
++LLK + ++ + + P+ +A T+ P ATR LR+ Q P +L+
Sbjct: 1568 SVLLKSDRVIVVVIISGPKPIPEDLAVTYALSAPTTSQNATRILRALQLPRPILL 1622
>SB_22679| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 894
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 147 CRRWYRPAFGPSTEAESSGDQAGFIRHSACDPRRRSDLSHMNTPAKVSGHK 299
CR+ + P S G Q+GFI+ S D++H A+++G K
Sbjct: 298 CRKGFNPPPKIPCHEHSLGVQSGFIKDSQMSASTIWDINHGAENARLNGEK 348
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 147 CRRWYRPAFGPSTEAESSGDQAGFIRHSACDPRRRSDLSHMNTPAKVSGHK 299
CR+ + P S G Q+GFI+ S D++H A+++G K
Sbjct: 584 CRKGFNPPPKIPCHEHSLGVQSGFIKDSQMSASTIWDINHGAENARLNGEK 634
>SB_2479| Best HMM Match : SecA_PP_bind (HMM E-Value=0.94)
Length = 327
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 611 RGPNSVAVPVIGGHSGITIIPILSQCQPALKLSDRPRS 724
+G V+VP +G I ++ C P LKLS P+S
Sbjct: 172 QGLRVVSVPATDEQAGNYITQSVTDCLPILKLSPSPKS 209
>SB_53803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = +2
Query: 446 ECTQSYCGHHHKPC*LYSAYCSEVLKKAGVYDP 544
+C CG H C ++S C + G+Y P
Sbjct: 179 QCGSPQCGIHSTQCGIHSPQCGIHSPQCGIYSP 211
>SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 581 RCHLRRRDQWRGPNSVAVPVIGGHSGITIIPILS 682
R Q R P+S A+ +GGHS +TI+ IL+
Sbjct: 471 RLKTTNNSQLRAPSSAALQSVGGHS-LTILGILT 503
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/63 (22%), Positives = 22/63 (34%)
Frame = -1
Query: 367 RGTPAGMTTTSASLMAADSSSGPLWPLTLAGVFMWERSLRRRGSQALCRIKPAWSPEDSA 188
+G P ++ A S PLW + +W A+ P W+ DS+
Sbjct: 2999 KGNPWTTMYEASPPWATMSVGSPLWATISEAILLWSTMSEGNPWTAMSEASPPWTTIDSS 3058
Query: 187 SVE 179
E
Sbjct: 3059 DTE 3061
>SB_2045| Best HMM Match : EGF (HMM E-Value=0)
Length = 1101
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = -3
Query: 497 CRVNRVCDDGHNSFGCILSNGQSNVTDNGSISVE*VITGHSRFTGYSCWDDYN 339
C C DG N F C+ + G + + +I + +G G +C D N
Sbjct: 636 CAGTGTCKDGINDFSCVCNTGYTGAKCDSNID-DCAASGQPCQNGATCKDGVN 687
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,868,934
Number of Sequences: 59808
Number of extensions: 540230
Number of successful extensions: 1647
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1644
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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