Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021141
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate dehydr...   142   2e-34
Z81129-1|CAB03408.1|  350|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U13646-6|AAC24421.2| 1376|Caenorhabditis elegans Flectin protein...    29   4.5  

>AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate
           dehydrogenase protein 1 protein.
          Length = 341

 Score =  142 bits (345), Expect = 2e-34
 Identities = 71/127 (55%), Positives = 93/127 (73%), Gaps = 1/127 (0%)
 Frame = +3

Query: 240 PRRRSDLSHMNTPAKVSGHKGPEELSAAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIV 419
           P   +DLSH+++ AKV+ H GP+EL AA+++ADV+VIPAGVPRKPGMTRDDLFNTNA IV
Sbjct: 66  PGVAADLSHIDSNAKVTAHTGPKELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIV 125

Query: 420 RDIALSIAQNAPKAIVAIITNPVNSTVPIALKCSRRREC-TTRTACSASPLWTYRAATFV 596
           RD+A  IA+ +PKA++AIITNPVNSTVPIA +  ++      +     + L   R+  FV
Sbjct: 126 RDLAAVIAKASPKALIAIITNPVNSTVPIASEVLKKAGVYDPKRVFGVTTLDVVRSQAFV 185

Query: 597 GEINGVD 617
            E+ G D
Sbjct: 186 SELKGHD 192



 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 41/74 (55%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
 Frame = +2

Query: 509 SEVLKKAGVYDPNRVLGVTTLDVSRCHLRRRD-QWRGPNSVAVPVIGGHSGITIIPILSQ 685
           SEVLKKAGVYDP RV GVTTLDV R      + +    +   VPV+GGH+GITIIP+LSQ
Sbjct: 156 SEVLKKAGVYDPKRVFGVTTLDVVRSQAFVSELKGHDASKTVVPVVGGHAGITIIPLLSQ 215

Query: 686 CQPALKLSDRPRSR 727
            +P+ K S+   S+
Sbjct: 216 VKPSTKFSEEEISK 229



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 24/32 (75%), Positives = 26/32 (81%)
 Frame = +1

Query: 160 IGQPLALLLKQNPLVTRLALYDIAPVTPGVAA 255
           IGQPL LLLKQ+PLV  LALYD+   TPGVAA
Sbjct: 40  IGQPLGLLLKQDPLVAHLALYDVVN-TPGVAA 70


>Z81129-1|CAB03408.1|  350|Caenorhabditis elegans Hypothetical
           protein T23F1.3 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 143 LVPPVVSASLWPFY*SRILW*PGWLYTT*RL*PP 244
           + P ++   +WP+    + W  GWLY+   + PP
Sbjct: 265 IAPTLLVPLIWPYLKIEVSWQTGWLYSVVGMYPP 298


>Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical
           protein ZK1067.4 protein.
          Length = 541

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 127 SSSVMWWKSSLHHFVQQGRQV 65
           S  ++WWKS  +H+ ++ RQV
Sbjct: 120 SPPIVWWKSVCYHYTRKTRQV 140


>U13646-6|AAC24421.2| 1376|Caenorhabditis elegans Flectin protein 1
            protein.
          Length = 1376

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 286  TLAGVFMWERSLRRRGSQALCRIKPAWSPEDSASVEGPKAG 164
            TL G+ MWERS R    +ALC+I  +   ++    +G ++G
Sbjct: 1073 TLEGMIMWERSSR----EALCQICKSMDGDEMLVCDGCESG 1109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,996,078
Number of Sequences: 27780
Number of extensions: 390407
Number of successful extensions: 1103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)