Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021141
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.8  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 245 ASQRPFPHEHPSQGQRPQGT*GAISS 322
           ASQ+  P  HP Q Q+ Q   G ++S
Sbjct: 213 ASQQSQPGMHPRQQQQAQQHQGVVTS 238


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/46 (15%), Positives = 20/46 (43%)
 Frame = +2

Query: 575 VSRCHLRRRDQWRGPNSVAVPVIGGHSGITIIPILSQCQPALKLSD 712
           V++C     + +RG       ++ G   +  +P+ +  +  ++  D
Sbjct: 562 VTKCKATNEETYRGGKGALSCLLDGKGDVAFVPLTALSEEGVQSKD 607


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/46 (15%), Positives = 20/46 (43%)
 Frame = +2

Query: 575 VSRCHLRRRDQWRGPNSVAVPVIGGHSGITIIPILSQCQPALKLSD 712
           V++C     + +RG       ++ G   +  +P+ +  +  ++  D
Sbjct: 562 VTKCKATNEETYRGGKGALSCLLDGKGDVAFVPLTALSEEGVQSKD 607


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/46 (15%), Positives = 20/46 (43%)
 Frame = +2

Query: 575 VSRCHLRRRDQWRGPNSVAVPVIGGHSGITIIPILSQCQPALKLSD 712
           V++C     + +RG       ++ G   +  +P+ +  +  ++  D
Sbjct: 562 VTKCKATNEETYRGGKGALSCLLDGKGDVAFVPLTALSEEGVQSKD 607


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 217 LYDIAPVTPGVAATFPT*TPQP 282
           LYDIAP++  V    P   P P
Sbjct: 181 LYDIAPLSDFVIHRSPELVPMP 202


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +3

Query: 162 RPAFGPSTEAESSGDQAGFIRHSACDPRRRSDLSHMNTPAKVSGHKGPEELSAAIKDADV 341
           RP F     AE   +++ FIR    +  R   L H    A+   H  PE  +  I  AD+
Sbjct: 120 RPVFSTLQRAEYPTNRSLFIREQTEEMYREMLLEHKKRRARRDIH--PELNTQGIALADL 177


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,679
Number of Sequences: 438
Number of extensions: 5064
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)