Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021140X
         (490 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31725| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37)        28   3.6  
SB_25704| Best HMM Match : Linker_histone (HMM E-Value=8.3e-37)        28   3.6  

>SB_31725| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37)
          Length = 184

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 406 TSKPAEKKTESAPTXKPGSAKAA 474
           T KPA KK  + P  KP + KAA
Sbjct: 147 TKKPAAKKAAAKPAKKPAAKKAA 169


>SB_25704| Best HMM Match : Linker_histone (HMM E-Value=8.3e-37)
          Length = 184

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 406 TSKPAEKKTESAPTXKPGSAKAA 474
           T KPA KK  + P  KP + KAA
Sbjct: 147 TKKPAAKKAAAKPAKKPAAKKAA 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.295    0.107    0.283 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,320,116
Number of Sequences: 59808
Number of extensions: 17717
Number of successful extensions: 36
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 44 (22.0 bits)