Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021139
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    27   3.4  
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    26   7.8  

>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = +2

Query: 287 YVVHYSDLIVNKFP*FGRPVFQLINHKLRVVKNSNNFKNYIHPYF 421
           Y+++Y+  I+N+FP      F+++++ L  +   +N + Y+ P F
Sbjct: 179 YLLYYTSFIINEFP--FEQAFEILSNALYAL---DNVQTYMRPIF 218


>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -3

Query: 546 SIYQLLRIFVDSLRLSVFYFLTTQI--*LVKDT*RPVKFFVLI 424
           +IY LLR+ +  L +SV +F        L K T   + FFVLI
Sbjct: 83  NIYSLLRLLIAVLAVSVVFFTAWGCVNPLEKSTFGKIAFFVLI 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,129,919
Number of Sequences: 5004
Number of extensions: 59060
Number of successful extensions: 124
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)