Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021139
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0654 - 12662931-12663200,12663296-12663550,12664097-126642...    31   1.5  
01_05_0444 + 22298490-22298598,22299847-22300108,22302420-223025...    29   4.7  

>02_02_0654 - 12662931-12663200,12663296-12663550,12664097-12664268,
            12664354-12664581,12664727-12664860,12665018-12665101,
            12665332-12665538,12665641-12665973,12666175-12666281,
            12666439-12666593,12666778-12666810,12666924-12666972,
            12667152-12667312,12667413-12668313,12668391-12668481,
            12668558-12668749
          Length = 1123

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 10/48 (20%), Positives = 29/48 (60%)
 Frame = -2

Query: 343  RSSELWEFVYYKIAVMNYIIF*AVLFIVCSCNPICK*VVITKIRPIYN 200
            ++S+ + F+++ ++  NY  F  ++ + C+ + +   ++IT   P++N
Sbjct: 977  KASKFFYFLFFIVSSFNYFTFFGMMLVACTPSALLANILITFALPLWN 1024


>01_05_0444 +
           22298490-22298598,22299847-22300108,22302420-22302516,
           22302633-22302647,22302775-22302831,22303481-22303557,
           22303688-22303967
          Length = 298

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +2

Query: 344 VFQLINHKLRVV--KNSNNFKNYIHPYFLINTKN 439
           V++LINH    +  KN+ NF +Y+  + +++TKN
Sbjct: 212 VYELINHVFPSLHDKNNANFASYMSTHAILSTKN 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,047,649
Number of Sequences: 37544
Number of extensions: 306976
Number of successful extensions: 541
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)