Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021139
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z81588-4|CAB04713.1|  413|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL031624-1|CAA20940.1|  413|Caenorhabditis elegans Hypothetical ...    29   3.2  

>Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical
           protein F07B10.4 protein.
          Length = 724

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 337 SELWEFVYYKIAVMNYIIF*AVLFIVCS 254
           S  WEF+   IA M   +F A +F+VCS
Sbjct: 583 STSWEFIVMMIASMTATVFFACIFVVCS 610


>Z81588-4|CAB04713.1|  413|Caenorhabditis elegans Hypothetical
           protein T07D10.4 protein.
          Length = 413

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 664 WWASTCVSRNLSMEQRPVGTQTPPHVPT 581
           W+++ CV  N  + +RP G Q P   PT
Sbjct: 263 WYSNNCVDNNKYVCKRPAGVQCPAVPPT 290


>AL031624-1|CAA20940.1|  413|Caenorhabditis elegans Hypothetical
           protein H16D19.1 protein.
          Length = 413

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 664 WWASTCVSRNLSMEQRPVGTQTPPHVPT 581
           W+++ CV  N  + +RP G Q P   PT
Sbjct: 263 WYSNNCVDNNKYVCKRPAGVQCPAVPPT 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,151,406
Number of Sequences: 27780
Number of extensions: 329042
Number of successful extensions: 631
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)