Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021139
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   4.7  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   4.7  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    22   6.2  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    22   6.2  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    22   6.2  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    22   6.2  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    22   6.2  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    22   6.2  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    22   6.2  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    22   6.2  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   6.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   6.2  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   6.2  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   6.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   8.2  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   8.2  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 83  YIYMSYNNKYTIPINMFRILTIDKLNI 3
           Y Y +YNN Y      + I+ I+++ +
Sbjct: 309 YNYKNYNNNYNSKKLYYNIINIEQIPV 335


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 83  YIYMSYNNKYTIPINMFRILTIDKLNI 3
           Y Y +YNN Y      + I+ I+++ +
Sbjct: 320 YNYKNYNNNYNSKKLYYNIINIEQIPV 346


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 383 NSNNFKNYIHPYFLIN 430
           N+NN+ NY   Y+ IN
Sbjct: 99  NNNNYNNYKKLYYNIN 114


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 383 NSNNFKNYIHPYFLIN 430
           N+NN+ NY   Y+ IN
Sbjct: 99  NNNNYNNYKKLYYNIN 114


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 383 NSNNFKNYIHPYFLIN 430
           N+NN+ NY   Y+ IN
Sbjct: 99  NNNNYNNYKKLYYNIN 114


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 383 NSNNFKNYIHPYFLIN 430
           N+NN+ NY   Y+ IN
Sbjct: 99  NNNNYNNYKKLYYNIN 114


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 383 NSNNFKNYIHPYFLIN 430
           N+NN+ NY   Y+ IN
Sbjct: 99  NNNNYNNYKKLYYNIN 114


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 383 NSNNFKNYIHPYFLIN 430
           N+NN+ NY   Y+ IN
Sbjct: 99  NNNNYNNYKKLYYNIN 114


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 383 NSNNFKNYIHPYFLIN 430
           N+NN+ NY   Y+ IN
Sbjct: 99  NNNNYNNYKKLYYNIN 114


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 383 NSNNFKNYIHPYFLIN 430
           N+NN+ NY   Y+ IN
Sbjct: 99  NNNNYNNYKKLYYNIN 114


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 383 NSNNFKNYIHPYFLIN 430
           N+NN+ NY   Y+ IN
Sbjct: 97  NNNNYNNYKKLYYNIN 112


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 383 NSNNFKNYIHPYFLIN 430
           N+NN+ NY   Y+ IN
Sbjct: 107 NNNNYNNYKKLYYNIN 122


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -1

Query: 770 CCKKKSMRTLPITI*HCF 717
           CC++  ++   IT+ HC+
Sbjct: 93  CCRESYLKERHITLHHCY 110


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -1

Query: 770 CCKKKSMRTLPITI*HCF 717
           CC++  ++   IT+ HC+
Sbjct: 93  CCRESYLKERHITLHHCY 110


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 207 IGRIFVITTYLQIGLQLQT 263
           I  +F+   Y++IGL++Q+
Sbjct: 216 IPMVFIAVLYIRIGLRIQS 234


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 371 RVVKNSNNFKNY 406
           + + N+NN+KNY
Sbjct: 321 KTIHNNNNYKNY 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,948
Number of Sequences: 438
Number of extensions: 4068
Number of successful extensions: 21
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)