Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021139
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78540.1 68414.m09154 transcription factor-related weak simil...    29   5.2  
At1g17040.1 68414.m02071 transcription factor-related contains P...    29   5.2  
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|...    28   6.8  
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|...    28   6.8  

>At1g78540.1 68414.m09154 transcription factor-related weak
           similarity to STAT protein (GI:2230824) and STATc
           protein (GI:13235235) [Dictyostelium discoideum]
          Length = 638

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +3

Query: 21  SQNPKHVNW-NGVFVVITH-IYIYKHKSSSIWHFDHELHKKI 140
           S+N +HV+W N V+ +  H + I K  S S+ H D EL ++I
Sbjct: 492 SRNNQHVHWDNVVYEIEEHFMRISKCSSRSLTHQDFELLRRI 533


>At1g17040.1 68414.m02071 transcription factor-related contains Pfam
           profile: PF00017 Src homology domain 2; similar to
           transcription factor [Danio rerio] (GI:3687402)
          Length = 641

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 21  SQNPKHVNWNGVFVVITHIY--IYKHKSSSIWHFDHELHKKI 140
           S+N +HV+W+ V + I   +  I K  S S+ H D +L ++I
Sbjct: 464 SRNYRHVHWDNVVIEIEEHFMRIAKCSSRSLTHQDFDLLRRI 505


>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 435

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 628 LINSGKRKSKPTNHPLSLCARAVPRRNNDKK 720
           +INS  R S   N PL L  R+  R N+D K
Sbjct: 225 MINSWNRSSNGFNFPLGLGLRSALRENDDTK 255


>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 424

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 628 LINSGKRKSKPTNHPLSLCARAVPRRNNDKK 720
           +INS  R S   N PL L  R+  R N+D K
Sbjct: 225 MINSWNRSSNGFNFPLGLGLRSALRENDDTK 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,560,747
Number of Sequences: 28952
Number of extensions: 279352
Number of successful extensions: 458
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)