Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021138
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    44   2e-05
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    28   1.3  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   2.3  
SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...    27   4.1  
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...    27   4.1  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   9.4  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    25   9.4  
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    25   9.4  

>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 24/85 (28%), Positives = 47/85 (55%)
 Frame = +3

Query: 255 ISMKQYEEQLNGLRKENFHLKLRIYFLEEKLGNGSPPAVQGLLEHNVRLQVEVEELRRQI 434
           +++K+    ++ LRKE F LKL+ YFL ++L       VQ +++ N+ L+    EL+R +
Sbjct: 249 LTLKEQANVIDNLRKEVFGLKLKCYFLYDQLNKFHDQEVQDIMKQNIDLKTLTMELQRAV 308

Query: 435 TDKQELLAAAAEAIDVLEQQGSVST 509
              ++ ++     I   +Q  ++ST
Sbjct: 309 AGYEKKISGLESRIKP-DQSFNLST 332


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 518 EVSMNNSASMKKAADPHDETTEKRDAVDDTCAESESA 628
           E+   + + +  A +PHDET E+   +  T  E+E A
Sbjct: 345 EIRRTSGSKISIAKEPHDETGERMFTITGTHEENEKA 381


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -3

Query: 668 PNPHCSLSPLSNHLQTPIPHTYRRRRPASLLSRHVDRRPFSSKRYCSWT--PPYCRR 504
           P+PH S+   S+  ++P+    R R   S  SRH   R  S  RY  ++  PPY  R
Sbjct: 131 PSPHSSVD--SHQSRSPVRSRDRDRSSRSSRSRHPSSR--SRHRYDDYSRSPPYSSR 183


>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1

Query: 130 IIKTIVNNFFHQHPSKLGTSPR 195
           IIKT  NN  + H  KLGT PR
Sbjct: 22  IIKTPGNNIRYLHIKKLGTIPR 43


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1

Query: 130 IIKTIVNNFFHQHPSKLGTSPR 195
           IIKT  NN  + H  KLGT PR
Sbjct: 22  IIKTPGNNIRYLHIKKLGTIPR 43


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
 Frame = +2

Query: 500 SLDDSMEVSMNNSASMKKAADPHDE------TTEKRDAVDDTCAESESAGD 634
           S D S E S + S S   +++  +E      T EK++   ++ ++SES+ D
Sbjct: 163 SSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSD 213


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 264 KQYEEQLNGLRKENFHLKLRIYFLEEKLGNGS 359
           KQY++ +  L+KEN  L  ++  L+ +L N +
Sbjct: 77  KQYQDTIGKLQKENNELLEQLEMLQAQLKNST 108


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 399 LQVEVEELRRQITDKQELLAAAAEAI 476
           +Q E+EE RRQ+  ++E L A  E +
Sbjct: 360 VQKEIEEKRRQLLAREEALRALEEKL 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,942
Number of Sequences: 5004
Number of extensions: 61122
Number of successful extensions: 189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)